| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2362811 = | 349 (1.100) | 18 (0.060) | 12/260 | NT | 5.2% | coding (492/825 nt) | PP_2072 | AraC family transcriptional regulator |
| ? | NC_002947 | 2362848 = | 320 (1.050) | coding (455/825 nt) | PP_2072 | AraC family transcriptional regulator | |||||
CTGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2362965‑2362811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaag‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCA > NC_002947/2362848‑2362995 CTGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGC > 2:4649993/1‑150 TGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCG > 2:3188989/1‑150 TGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCG > 2:4079934/1‑150 CGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAA < 1:5043433/150‑1 TCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATC < 2:1116987/150‑1 ACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAA > 2:5560102/1‑66 ACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAA < 1:5560102/66‑1 GGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAGCGCCTGGATTACCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGT > 2:7142291/1‑150 GATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTATTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGA > 1:55312/1‑150 CCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGA < 2:2662406/108‑1 CCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGA < 2:2661998/108‑1 CCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGA < 2:2662166/108‑1 CCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGA > 1:2662406/1‑108 CCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGA > 1:2662166/1‑108 CCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGA > 1:2661998/1‑108 CTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCC > 1:3760254/1‑150 TTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCG > 1:6053380/1‑150 TTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCG > 2:3023859/1‑150 TTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCC < 1:3738876/63‑1 TTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCC > 2:3738876/1‑63 TGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTG > 2:3015494/1‑121 TGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTG < 1:3015494/121‑1 CGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAA > 2:1136706/1‑104 CGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAA < 1:1136706/104‑1 CGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCC > 2:7220140/1‑150 CGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCC < 1:497001/150‑1 CGCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCC < 1:2022227/150‑1 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCACAGGCTGACCACCCA > 2:3256863/1‑150 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGGCCACCCA > 2:6811135/1‑150 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCA < 2:2007791/150‑1 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCA > 1:4492925/1‑150 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCA > 2:5090762/1‑150 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCA > 2:6811255/1‑150 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCA > 1:1129440/1‑150 GCAAG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGCACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCA > 2:1460448/1‑150 AG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCA < 2:2350018/150‑1 AG‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCA < 1:1141256/150‑1 CTGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2362965‑2362811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaag‑GC‑‑‑GATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCA > NC_002947/2362848‑2362995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |