New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3974576 = | NA (NA) | 8 (0.030) | 6/270 | NT | NA | coding (218/321 nt) | PP_3499 | transposase |
? | NC_002947 | 3974618 = | NA (NA) | coding (260/321 nt) | PP_3499 | transposase |
CGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3974725‑3974576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGTGT > NC_002947/3974618‑3974766 CGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTG < 2:5565433/150‑1 TGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCG > 1:426059/1‑150 TGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCG > 1:7300175/1‑150 CCATTTAACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGTTAAATGGCCAGCCTAGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATG > 1:4528144/1‑150 CATTTCACCGTGATCACTTGCCCGGCCACGGGCAA‑‑‑G‑TGAACACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACAT > 1:7269133/1‑150 TTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACA > 2:4791357/1‑150 TTCACCGTGATCACTTGCCCGGCCACGGGCAA‑‑‑G‑TGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCGTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCG > 2:7139952/1‑150 ACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGC > 1:4216812/1‑150 ACTTGCCCGGCCACGGGCAACTCGATGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCA > 1:836449/1‑150 GTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGTGT > 1:3293173/1‑150 GTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGTGT > 1:5008979/1‑150 GTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGTGT > 2:7439681/1‑150 CGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3974725‑3974576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGTGT > NC_002947/3974618‑3974766 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |