New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5201380 =	304 (0.960)	17 (0.060)	6/252	NT	6.0%	coding (132/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	5201425 =	254 (0.860)					coding (87/690 nt)	ybgJ	allophanate hydrolase subunit 1

GCCAGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5201536‑5201380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGTC  >  NC_002947/5201425‑5201573                                                                                                                                                                                                                                                                                                                        GCCAGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGG                                                                                                                                                              <  1:3080461/150‑1  CCAGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGC                                                                                                                                                             <  2:631719/150‑1    AGGCCCTCGCTGGGCTGGAGGTGTGATGAAGCCGCGACTCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTAGCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGA                                                                                                                                                           <  2:6069592/150‑1    AGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGA                                                                                                                                                           <  1:7267140/150‑1    AGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGA                                                                                                                                                           <  1:3163593/150‑1    AGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGA                                                                                                                                                           >  2:616579/1‑150       CCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCA                                                                                                                                                        >  2:4815325/1‑150        CCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCAT                                                                                                                                                       >  2:4349110/1‑150        CCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGATACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCAT                                                                                                                                                       >  2:849429/1‑150                       GGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGAACGCC‑GCGCTCAAGCGCCGGCTGG‑‑‑CGGCGAGCATCCATGGCATGTTGAC                                                                                                                                        <  2:4790680/150‑1                                                                                                                GATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAG                                               >  2:2454699/1‑150                                                                                                                  TGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGG                                             >  1:4509726/1‑150                                                                                                                   GCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACCGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCGTCATCACACCTCCAGCCCATCGAGGGC                                            >  1:2942376/1‑150                                                                                                                   GCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGC                                            >  1:2942452/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGG                                             >  1:2023567/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGG                                             >  1:3277611/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCT                                          >  2:4020487/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCT                                          >  2:1689851/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCT                                          >  1:1830950/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCT                                          >  1:5970537/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCT                                          >  1:3631761/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCT                                          >  1:3631550/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATAGAGGGCCT                                          >  2:3970008/1‑150                                                                                                                     TCGCCGCCAGCCGGCGCGTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCCTCAGGCTGGCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCAGCGAGGGCCT                                          >  2:6512214/1‑150                                                                                                                                      TTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACC                         >  2:1045018/1‑150                                                                                                                                      TTGAGCG‑CGGCGTT‑‑‑CGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACC                         >  1:3511805/1‑150                                                                                                                                                           CGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTC        <  2:2351665/150‑1                                                                                                                                                           CGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTC        <  1:2454699/150‑1                                                                                                                                                           CGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTC        <  2:3924916/150‑1                                                                                                                                                           CGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTC        <  1:2879040/150‑1                                                                                                                                                            GAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTGCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACGGTCG       >  2:3924375/1‑150                                                                                                                                                            GAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTATCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCG       <  2:1064884/150‑1                                                                                                                                                              GCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTT     <  1:7149658/150‑1                                                                                                                                                                ATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGT   >  1:4657508/1‑150                                                                                                                                                                ATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGT   >  1:3220819/1‑150                                                                                                                                                                ATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGT   <  2:1993801/150‑1                                                                                                                                                                 TCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGTC  <  2:6168525/150‑1                                                                                                                                                                 TCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGTC  <  2:3920356/150‑1                                                                                                                                                                 TCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGTC  <  1:1367472/150‑1                                                                                                                                                                                                                                                                                                                        GCCAGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTT‑‑‑CGGCGAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5201536‑5201380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGTTGTC  >  NC_002947/5201425‑5201573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.