New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3952906 =209 (0.660)36 (0.140) 13/216 NT 20.9% coding (136/1797 nt) PP_3483 type II secretion system protein
?NC_002947 3952991 = 107 (0.420)coding (51/1797 nt) PP_3483 type II secretion system protein

Only 100 of 319 total aligned reads displayed.

AATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGA  >  NC_002947/3952759‑3953050
                                                                                                                                                   |                                                                                                                                                
  gcccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTc                                                                                                                                              >  2:4112601‑M1/146‑150 (MQ=255)
    ccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcgc                                                                                                                                            <  1:5240261‑M1/7‑1 (MQ=255)
     aGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTcgcg                                                                                                                                           <  1:4975495/150‑1 (MQ=255)
      gggTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCgg                                                                                                                                          <  2:4965849/150‑1 (MQ=255)
       acgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCggg                                                                                                                                         >  2:1121232‑M1/141‑150 (MQ=255)
       acgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCggg                                                                                                                                         >  2:1614088‑M1/141‑150 (MQ=255)
        cgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGc                                                                                                                                        <  1:3924480‑M1/11‑1 (MQ=255)
        cgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGc                                                                                                                                        >  1:4609750‑M1/140‑150 (MQ=255)
         gacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCa                                                                                                                                       <  1:3632107‑M1/12‑1 (MQ=255)
          acgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCAt                                                                                                                                      >  1:2078897‑M1/138‑150 (MQ=255)
            gatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGc                                                                                                                                    <  2:2602021‑M1/15‑1 (MQ=255)
             gCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGcc                                                                                                                                   <  1:3431314/150‑1 (MQ=255)
             atcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGcc                                                                                                                                   >  2:4884877‑M1/135‑150 (MQ=255)
               ccAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCg                                                                                                                                 <  2:5337725/150‑1 (MQ=255)
                aactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGc                                                                                                                                <  2:1067622‑M1/19‑1 (MQ=255)
                 actgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCt                                                                                                                               >  1:5479003‑M1/131‑150 (MQ=255)
                 aGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCt                                                                                                                               <  2:4014149/150‑1 (MQ=255)
                  ggCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTc                                                                                                                              <  1:4065687/150‑1 (MQ=255)
                   tgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTcc                                                                                                                             >  1:3716948‑M1/129‑150 (MQ=255)
                     ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCca                                                                                                                           >  1:7021740‑M1/127‑150 (MQ=255)
                     ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCca                                                                                                                           >  2:680375‑M1/127‑150 (MQ=255)
                     ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCca                                                                                                                           >  2:5855873‑M1/127‑150 (MQ=255)
                      tcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcgc                                                                                                                                            >  2:31672‑M1/126‑132 (MQ=255)
                      tcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCAtgcccgcgaagac                                                                                                                          >  2:1487525‑M1/126‑144 (MQ=255)
                      ccGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCcac                                                                                                                          >  1:1216156/1‑150 (MQ=255)
                      ccGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCcac                                                                                                                          >  1:5947185/1‑150 (MQ=255)
                      ccGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCcac                                                                                                                          <  2:6006860/150‑1 (MQ=255)
                       cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCcaca                                                                                                                         >  1:1400851‑M1/125‑150 (MQ=255)
                       cGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCcaca                                                                                                                         <  2:2049925/150‑1 (MQ=255)
                       cGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCcaca                                                                                                                         <  2:287023/150‑1 (MQ=255)
                        gggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                        <  1:6034852/150‑1 (MQ=255)
                        gggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                        >  1:5663764/1‑150 (MQ=255)
                        gggTGAAGGGGTCGGGGGGCTCGCAGGCCAGGCGCTCCAGGCAGTCGAGCCGGCGCGCGTCAGTGGCGTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGGAGGCGGAAATTTTGGCTGGGTTCTTCGCGGGCAGGCCCGCTCCCACAg                                                                                                                        <  2:444971/150‑1 (MQ=255)
                         ggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGGCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAgg                                                                                                                       >  1:313977/1‑150 (MQ=255)
                         cccgggaatcgcggcgcccgcaccccgggccgagccagccggcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAgg                                                                                                                       >  2:6267115‑M1/123‑150 (MQ=255)
                          aggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATTCCCGCTGCCACAGGt                                                                                                                      <  1:6591068‑M1/29‑1 (MQ=255)
                            gAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTAc                                                                                                                    <  1:5428664/150‑1 (MQ=255)
                            gAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTAc                                                                                                                    <  1:2692320/150‑1 (MQ=255)
                               ggTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATc                                                                                                                 <  1:7417867/150‑1 (MQ=255)
                                gtgtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATca                                                                                                                <  2:3105743/150‑1 (MQ=255)
                                  gtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca                                                                                                              <  2:5475681/150‑1 (MQ=255)
                                  gtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca                                                                                                              <  2:4730375/150‑1 (MQ=255)
                                  gtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca                                                                                                              <  2:1704578/150‑1 (MQ=255)
                                   tCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGGACATCACAg                                                                                                             >  1:4275172/1‑150 (MQ=255)
                                     gggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAGGTGCATCACAGGt                                                                                                           >  1:2633386/1‑150 (MQ=255)
                                     ggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGt                                                                                                           >  2:7440832‑M1/111‑150 (MQ=255)
                                         gtgtCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt                                                                                                       <  1:6942678/150‑1 (MQ=255)
                                            tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTggg                                                                                                    >  2:3656480/1‑150 (MQ=255)
                                            tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTggg                                                                                                    >  2:1880851/1‑150 (MQ=255)
                                            tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCGGTggg                                                                                                    >  1:718151/1‑150 (MQ=255)
                                              gCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCt                                                                                                  <  1:4875819/150‑1 (MQ=255)
                                                 ggccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGGGGCCTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCa                                                                                               <  1:1174165/150‑1 (MQ=255)
                                                    ggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATAc                                                                                            >  2:4649714‑M1/96‑150 (MQ=255)
                                                     aggcGTACCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGAAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTACTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACa                                                                                           <  1:5323975/150‑1 (MQ=255)
                                                          ttCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACCTCACAGGTCTGTGGGCTGCATACATCCtg                                                                                      >  2:5912508/1‑150 (MQ=255)
                                                           ccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgt                                                                                     >  1:611573‑M1/89‑150 (MQ=255)
                                                             cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                   <  1:1573391/150‑1 (MQ=255)
                                                             agcctgcgacgcgccccttagcggagtcgcaggccatgacagaagcattctttgcaaccccggaatctgcaaagcctgcaccgaggTCTTCGCGGGCTTGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                   >  1:654853‑M1/87‑150 (MQ=255)
                                                             agcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                   >  1:4470519‑M1/87‑150 (MQ=255)
                                                              gcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTggg                                                                                  >  2:3857439‑M1/86‑150 (MQ=255)
                                                               ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa                                                                                 <  1:1880851/150‑1 (MQ=255)
                                                               ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGGGGGCTGCATACATCCGGTGGGa                                                                                 >  2:5176008/1‑150 (MQ=255)
                                                                gCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCCTGCCCCCTCCCACACGTACAACACAGGTCGGTGGGGTGCATACATACAGTGGGAg                                                                                >  1:3118918/1‑150 (MQ=255)
                                                                gCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca                                                                                                              >  2:2205042/1‑120 (MQ=255)
                                                                gCAGTCAAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAg                                                                                <  1:1038720/150‑1 (MQ=255)
                                                                 cAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGc                                                                               <  1:811270/150‑1 (MQ=255)
                                                                  aGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCACACCGGGACCTCCCAGGTCTGTGGGCTGCCTACAAACGGTGTGAGCg                                                                              >  1:6220456/1‑150 (MQ=255)
                                                                   gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAAATTTTGCTGGGTACTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg                                                                             <  1:1524793/150‑1 (MQ=255)
                                                                   cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg                                                                             >  1:6899194‑M1/81‑150 (MQ=255)
                                                                   cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg                                                                             >  2:1364121‑M1/81‑150 (MQ=255)
                                                                    tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCggg                                                                            <  1:3283784/150‑1 (MQ=255)
                                                                    tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGGGGGCTGCATACATCCTGTGGGAGCggg                                                                            >  2:6148561/1‑150 (MQ=255)
                                                                      gAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACCGGTCTGGGGGCTGCATACATCCGGTGGGAGCGGGCa                                                                          >  1:2977036/1‑150 (MQ=255)
                                                                         cAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGc                                                                       <  2:7321230/150‑1 (MQ=255)
                                                                           ccctgagcggagtcgcaggccatgccagacgcattcgatgcaaccccggaatcggcaaagcctgcaccgccgTCTTCGCGGGCAGGCCCGCTCCCACCGGTCCATCACCGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGccc                                                                     >  1:111495‑M1/73‑150 (MQ=255)
                                                                              gcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCcgcg                                                                  >  2:276605/1‑150 (MQ=255)
                                                                                tCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCACCCACAGGTACAACACCCCGCAGTGGGCAGCCTACAACCGGTGGGACCGCGCCGGCCcccgca                                                                >  1:7140620/1‑148 (MQ=255)
                                                                                agcggagtcgcaggccatgccagaagcattcgatgccaccccggaatctgcaacgcctgcaccgacgTCGTCGGGGGCATGCCCGCTCCCCCAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGaa                                                                >  2:5086466‑M1/68‑150 (MQ=255)
                                                                                  ggccggggCTTGCAGCCGGGCCTGGGCCTGGTGGGCGCGGGGGTCGGGGGAAATTTTTGCTGGGTTCTTCGCGGGCAGGCCCGCGCCCACCGGTCCATCCCCGGTCGGTGGGCTGCATACCTCGGGTGGGAGCGGGCATGCCCGCGAAGa                                                              <  2:7140951/144‑1 (MQ=255)
                                                                                   tCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCCTGCCCGCgacgac                                                             >  2:6591068/1‑150 (MQ=255)
                                                                                       tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTCGGCGGAAATGTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCCGGCCCGCGACGACGGCg                                                         >  2:6972542/1‑150 (MQ=39)
                                                                                       tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATa                                                                                             >  1:5739265/1‑114 (MQ=255)
                                                                                       tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATa                                                                                             <  2:5739265/114‑1 (MQ=255)
                                                                                         gCTTGCAGACGGCCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGt                                                       >  2:5648241/1‑150 (MQ=255)
                                                                                               aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGc                                                 >  2:2952930/1‑150 (MQ=255)
                                                                                                       cTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgt                                                                                     <  1:6683086/106‑1 (MQ=255)
                                                                                                       cTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgt                                                                                     >  2:6683086/1‑106 (MQ=255)
                                                                                                       cTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCGGTGGGCTGCTTACATCGAGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCGGTGCAgc                                         >  2:3741971/1‑149 (MQ=255)
                                                                                                       cTGGGACTGGCGGGCGCGGGGGTCGGCGCATTTTTGTGCTGGGTTCTTCGCGGCCCGGCCCGCCCCCCCGGGTACAGCACCGGTGGGTGGGCTGCATACATCCGGGGGGAGGGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGa                                         <  2:298231/150‑1 (MQ=255)
                                                                                                            ttcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCggg                                                                            >  1:5628120‑M1/40‑110 (MQ=255)
                                                                                                               gatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAgg                                                                                                                       <  2:2300248‑M1/28‑1 (MQ=255)
                                                                                                               gatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAgg                                                                                                                       >  1:2300248‑M1/37‑64 (MQ=255)
                                                                                                                         ggggTTGGCGGAATTTTTTGCTGGGTTCTTCGCGGGCTTGCCCGCTCCCACAGTTACACCCCTGGTCTGTGGGCTGCATACTTCCGGTGGGAGCGGGCTTGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                       <  2:3317706/150‑1 (MQ=255)
                                                                                                                          gggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg                                                                             <  1:2517240/95‑1 (MQ=255)
                                                                                                                          gggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg                                                                             >  2:2517240/1‑95 (MQ=255)
                                                                                                                            gttgggggAATTTTTTGCGGGGTTGTTCGGGGGCTGGCCCGGTCCCACGGGTACCGCCCCGGTGTGTGGGCTGCATCCAGCCTGGGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGc                    <  1:1708805/144‑1 (MQ=255)
                                                                                                                                gctgAAATTTTTGCTGGGTTCTTCGGGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCt                <  2:4275172/147‑1 (MQ=255)
                                                                                                                                  ggAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTTCATCGAATGCTTCTgg              >  2:675617/1‑150 (MQ=255)
                                                                                                                                       tttttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATTCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATgg         >  2:3924480/1‑150 (MQ=255)
                                                                                                                                              tGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgtg                                                                                    >  1:1597563/1‑68 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
AATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGA  >  NC_002947/3952759‑3953050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.