BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3956090	94 (0.300)	12 (0.050)	7/216	NT	11.6%	intergenic (‑61/+134)	PP_3486/PP_3487	cytochrome c/hypothetical protein
*	?	NC_002947	= 3956150	108 (0.430)	12 (0.050)	7/216	NT	11.6%	intergenic (‑121/+74)	PP_3486/PP_3487	cytochrome c/hypothetical protein

Only 100 of 206 total aligned reads displayed.

TACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGC  >  NC_002947/3955942‑3956239

tACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAggg                                                                                                                                                      <  1:4976918/150‑1 (MQ=255)

 aCTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGc                                                                                                                                                     <  2:3645134/150‑1 (MQ=255)

 aCTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGc                                                                                                                                                     <  1:994217/150‑1 (MQ=255)

    ggAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGGCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCACGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTgc                                                                                                                                                  <  2:5121955/150‑1 (MQ=255)

       gaCGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCgca                                                                                                                                               <  1:753244/150‑1 (MQ=255)

         cGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTgctgcgc                                                                                                                                             <  1:6939161/150‑6 (MQ=255)

            ccTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCagcagc                                                                                                                                          <  2:2191627/150‑1 (MQ=255)

            ccTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCagcagc                                                                                                                                          <  2:6942999/150‑1 (MQ=255)

              tCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGccc                                                                                                                                        >  1:6108662/1‑150 (MQ=255)

               cgcgGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGcccc                                                                                                                                       <  1:6056250/150‑1 (MQ=255)

               cgcgGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGcccc                                                                                                                                       <  1:1477013/150‑1 (MQ=255)

                 cgGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCTGCGCAGcccttt                                                                                                                                     <  1:5774808/150‑4 (MQ=255)

                  ggTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCTGCGCAGccctttc                                                                                                                                    <  2:3439678/150‑5 (MQ=255)

                  ggTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGc                                                                                                                                    <  2:6377928/150‑1 (MQ=255)

                     aaaGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGt                                                                                                                                 <  2:5605338/150‑1 (MQ=255)

                     aaaGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGt                                                                                                                                 <  2:4882416/150‑1 (MQ=255)

                     aaaGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGt                                                                                                                                 <  2:739356/150‑1 (MQ=255)

                       aGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTgg                                                                                                                               >  2:6767626/1‑150 (MQ=255)

                       aGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTgg                                                                                                                               >  2:7396886/1‑150 (MQ=255)

                         gCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGATGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGATCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCa                                                                                                                             <  2:4304977/150‑1 (MQ=255)

                         gCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCa                                                                                                                             <  1:2305830/150‑1 (MQ=255)

                             ttGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTc                                                                                                                         <  2:2393776/150‑1 (MQ=255)

                                 cTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTGGGGCGCGAAAGGGCAGCGCCGCAGCCCCCGCCCGGGCAGCTCAAgc                                                                                                                     >  2:1119504/1‑150 (MQ=255)

                                  tGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCCGCCCTGGCAGCACCAgcg                                                                                                                    >  2:2422479/1‑150 (MQ=39)

                                    cTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCACGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCa                                                                                                                  <  2:1604760/150‑1 (MQ=255)

                                       gTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGaa                                                                                                               <  2:5034286/150‑1 (MQ=255)

                                         tCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCa                                                                                                                                   <  1:1027245/128‑1 (MQ=255)

                                          cGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGGTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAaga                                                                                                            <  2:3831183/150‑1 (MQ=255)

                                           gTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAagag                                                                                                           <  2:4138451/150‑1 (MQ=255)

                                            tGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAgg                                                                                                          <  2:5959392/150‑1 (MQ=255)

                                            tGGTCGGTCAGATCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAgg                                                                                                          <  2:4846672/150‑1 (MQ=255)

                                                      ggTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgc                                                                                                <  1:3460159‑M1/150‑56 (MQ=255)

                                                         ccagggccagggCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTgcgcg                                                                                             <  2:6711674/150‑1 (MQ=255)

                                                          cagggccagggcTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTgcgcgc                                                                                            <  2:5620243/150‑1 (MQ=255)

                                                            gggCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTc                                                                                          >  2:5071439‑M2/1‑149 (MQ=255)

                                                                 aGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttc                                                                                     >  2:4244595‑M2/1‑144 (MQ=255)

                                                                 aGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttc                                                                                     >  2:7199693‑M2/1‑144 (MQ=255)

                                                                 aGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCCAAAGGGCGGCGCACCAGCCCCCGCACTGGCAGCGCCACCGCAGCAAGAGGGGAGCGCTGCGCGCGcctata                                                                                     <  2:7335227‑M2/150‑7 (MQ=255)

                                                                   ggCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgc                                                                                   >  1:3786862‑M2/1‑142 (MQ=255)

                                                                      tGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgac                                                                                <  1:5550645‑M1/150‑72 (MQ=255)

                                                                      tGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgac                                                                                <  2:4354763‑M1/150‑72 (MQ=255)

                                                                      tGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgac                                                                                <  1:4381084‑M1/150‑72 (MQ=255)

                                                                      tGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgac                                                                                >  1:5811990‑M2/1‑139 (MQ=255)

                                                                         ggTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTGGGGGGCGAAAGGGCAGCGCACCCGCCCCCCCACGGGCAGCACAAGCGCCCAAAGAGGGGAGCGCAGCGCGCGCCAGTAGCGACGCa                                                                             >  2:3060704/1‑150 (MQ=255)

                                                                          gTCGATGTTGCCATGCCCAGCACGCAGGTAAGCCATACCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaa                                                                            >  1:129391‑M2/1‑135 (MQ=255)

                                                                          gTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaa                                                                            >  1:2635454‑M2/1‑135 (MQ=255)

                                                                          gTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaa                                                                            >  1:129279‑M2/1‑135 (MQ=255)

                                                                          gTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTTGGGCGCGAAATGGCTGCGCCCCACCCCCCCCCCTGGCCGCTCCAGCGCCGAAAAAGGGGGGCGCTGCGCGCGCCCTTCGCGGCGCac                                                                            >  2:1709321/1‑149 (MQ=255)

                                                                             gAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAACGGGCTGCGCAGCCGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggc                                                                         >  1:1551983‑M2/1‑132 (MQ=255)

                                                                             gAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggc                                                                         >  2:6107957‑M2/1‑132 (MQ=255)

                                                                               aGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccg                                                                       >  2:4253599‑M2/1‑130 (MQ=255)

                                                                                 ttGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGGAAGGGCTGCGCAGCACCCCCCGCCGGGGCCGCACAAGCGCCGAAAGAGGGGAGCGCAGCGCGCAccgttcgcgccccaaggccccc                                                                     <  2:6718990‑M2/150‑23 (MQ=255)

                                                                                   gccatgccaAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTGCGTCGCGGAAGGGCGGCGCCGCCGCCCCGGCAGTGGCCGCGCCCGCGCCGAAAGGGGGGCGCGCGGCGCGCGCCGTTCGCGACCCCACGCCGCTcc                                                                   >  2:6037083/1‑150 (MQ=255)

                                                                                   gccatgccaAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTGCGGGGCGGAAGGGCTGCGCCCCCCCCCCCGCCCGGGCCGCGCCACCGCCCCAAGCGGGGGGCGCGGCGCGCGCCGTTGGCGACGCAAGGCCCCTcc                                                                   >  2:7194365/1‑150 (MQ=255)

                                                                                    ccatgccaAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTGCGTCGGGCAAGGGCGGGGCCCCCGCCCCCCCCCGGGCACCGCAACCCCCCCAACAGGGGGGCCCCGCGCGCCCCGATCGCGCCGCAACGCCGCGccc                                                                  >  2:6557494/1‑150 (MQ=255)

                                                                                       tgccaAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGGCGTGGGGCGGGGGAGGGGGGCGCCGCAGCCCCCGCCCGGGGGGCTCAAACGCCGGCATAGGGGGGCGCGGGCCCCGCCCTTAGCGGCCCAAAGCCGCGcccccc                                                               >  2:2155102/1‑147 (MQ=255)

                                                                                            aGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCAGCGCCCCAGCCCCCGCCCGGGCCCCTCCAGCGCCGACAGAGGGGCGCGCTGCGCGGGCCTTTCGCGACGCAAGGCCGCGCCCACacaacc                                                          >  2:7441549/1‑148 (MQ=255)

                                                                                                cGCTGGTACGCCATCTCGCACGCCGTGGGGGCGGGGCCTGGCGGCGCGACCGGGCGGCGCCGCCGCCCCGGCAGGGGCAGCTCAAGCGCTAAACGCGGGTTGCGCGGCGCGCTCATTACGCGACGAACGGCCGCTCCCACAAAAGCGGAt                                                      <  2:2940366/150‑1 (MQ=255)

                                                                                                                           tgGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccagggctgcgcagcagccccggc                                                                                     <  1:7113365‑M1/92‑67 (MQ=255)

                                                                                                                           tgGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccagggctgcgcagcagccccggc                                                                                     >  2:7113365‑M1/1‑26 (MQ=255)

                                                                                                                                   gCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttc                   >  1:6767626‑M1/1‑18 (MQ=255)

                                                                                                                                   gCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttc                   >  1:7396886‑M1/1‑18 (MQ=255)

                                                                                                                                   gCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttga                                                                                                                       >  1:4335604‑M1/1‑18 (MQ=255)

                                                                                                                                   gCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttga                                                                                                                       <  2:4335604‑M1/50‑33 (MQ=255)

                                                                                                                                    ccTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcg                  >  1:4497079‑M1/1‑17 (MQ=255)

                                                                                                                                    ccTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcg                  >  2:475807‑M1/1‑17 (MQ=255)

                                                                                                                                    ccTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATAc                  >  1:1284244/1‑150 (MQ=255)

                                                                                                                                    ccTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATAc                  >  1:1565246/1‑150 (MQ=255)

                                                                                                                                      ttGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgac                >  2:6940220‑M1/1‑15 (MQ=255)

                                                                                                                                      ttGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTc                >  1:6720697/1‑150 (MQ=255)

                                                                                                                                          gTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctca            >  1:6610836‑M1/1‑11 (MQ=255)

                                                                                                                                          gTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctca            >  1:6610743‑M1/1‑11 (MQ=255)

                                                                                                                                          gTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctca            >  1:6610750‑M1/1‑11 (MQ=255)

                                                                                                                                          gTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgattggcatggcaacttagacctca            <  1:1490632‑M2/150‑80 (MQ=255)

                                                                                                                                          gTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccg            >  1:1667712/1‑150 (MQ=255)

                                                                                                                                              cgAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccgaccg        >  2:5340128/1‑150 (MQ=255)

                                                                                                                                               gAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccct       >  2:5279769‑M1/1‑6 (MQ=255)

                                                                                                                                               gAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccct       >  2:7187474‑M1/1‑6 (MQ=255)

                                                                                                                                               gAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccct       >  1:1659308‑M1/1‑6 (MQ=255)

                                                                                                                                               gAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccct       <  2:5843503‑M2/150‑85 (MQ=255)

                                                                                                                                               gAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCgg       >  2:4369318/1‑150 (MQ=255)

                                                                                                                                               gAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCgg       >  2:5841259/1‑150 (MQ=255)

                                                                                                                                               gAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCgg       >  2:2490796/1‑150 (MQ=255)

                                                                                                                                                agaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcg                                                                                    <  1:6605313‑M1/70‑68 (MQ=255)

                                                                                                                                                agaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcg                                                                                    >  2:6605313‑M1/3‑5 (MQ=255)

                                                                                                                                                actggggTGCGCCCCAGCCCCGTCTGGGGCAGCTCACGCGAATAAGGTGGGGCGCGGGGCCCGCCCCTTCCGCGCCGCAGGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGc      <  2:2767051/147‑1 (MQ=255)

                                                                                                                                                aaaGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccctg      >  2:2832543‑M1/1‑5 (MQ=255)

                                                                                                                                                aaaGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccctg      >  2:1673881‑M1/1‑5 (MQ=255)

                                                                                                                                                aaaGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccctg      <  2:739798‑M2/150‑86 (MQ=255)

                                                                                                                                                 ggggagcgctgcgcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgt                                     >  1:2296158‑M1/3‑4 (MQ=255)

                                                                                                                                                 ggggagcgctgcgcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgt                                     <  2:2296158‑M1/116‑115 (MQ=255)

                                                                                                                                                  tgggCTGCGCAGCAGCCCCGGCTGTGGCAGCTCACGCGCAGAAAGTGGGGCGCGCTGCGCGCACCTTTCGCGCCGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCa    <  2:4912396/149‑1 (MQ=255)

                                                                                                                                                  ggggCTGCTGCGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCa    >  1:2584679/2‑150 (MQ=255)

                                                                                                                                                  ggggCTGCTGCGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCa    >  1:7115694/2‑150 (MQ=255)

                                                                                                                                                  ggggCTGCTGCGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTAGCGACGCAAGGCCGCTCCCACAAAATCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTAACCGACCGGCCa    >  1:1880574/2‑150 (MQ=255)

                                                                                                                                                   gggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccctggcc   <  1:3819140‑M2/150‑89 (MQ=255)

                                                                                                                                                   gggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccctggcc   <  2:179235‑M2/150‑89 (MQ=255)

                                                                                                                                                   gggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccctggcc   <  1:106168‑M2/150‑89 (MQ=255)

                                                                                                                                                   gggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAg   >  1:794364/1‑150 (MQ=255)

                                                                                                                                                    ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGc  >  2:1168336/1‑150 (MQ=255)

TACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGC  >  NC_002947/3955942‑3956239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.