| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,556,967 | A→T | 11.1% | intergenic (+68/+113) | pydA → / ← rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,556,967 | 0 | A | T | 11.1% | 427.4 / 37.2 | 144 | intergenic (+68/+113) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
| Reads supporting (aligned to +/- strand): ref base A (30/97); new base T (9/7); total (40/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.38e-01 | |||||||||||
Only 100 of 150 total aligned reads displayed.
AAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTG > NC_002947/4556820‑4557116 | aaaTGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGcaca < 2:4617125/150‑1 (MQ=255)aaaTGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGcaca < 1:1342886/150‑1 (MQ=255) gAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGc < 1:7197541/150‑1 (MQ=255) aGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCGACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCTGTGCGGcc < 1:5381853/150‑1 (MQ=255) gCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGcccc < 1:4939902/150‑1 (MQ=255) gCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGcccc < 1:7410752/150‑1 (MQ=255) cacaGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCTGTGCGGcccga < 2:3812546/150‑3 (MQ=255) cacaGGAGACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGTACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCTGTGCGGcccga < 2:2725785/150‑3 (MQ=255) caGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGTGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCcagc > 2:3954663/1‑150 (MQ=255) caGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCTATCGGGCCGCACAGCGGCCCcagc < 1:1533563/150‑1 (MQ=255) aGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCTGTGCGGcccgatcg < 2:1693706/150‑6 (MQ=255) aGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCcagca < 2:5738033/150‑1 (MQ=255) aTACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTc < 1:2497728/150‑1 (MQ=255) aTACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTc < 2:5988146/150‑1 (MQ=255) aTACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTc < 1:4212482/150‑1 (MQ=255) aTACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTc < 2:4619185/150‑1 (MQ=255) aCCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCtt < 1:368352/150‑1 (MQ=255) cGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTg > 1:5250296/1‑150 (MQ=255) cGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTg < 1:1509129/150‑1 (MQ=255) ggCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGccc < 2:4947249/137‑1 (MQ=255) cAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGTGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCcg < 1:3954663/150‑1 (MQ=255) aaGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCcgc < 2:6089068/150‑1 (MQ=255) gCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGa < 2:5250296/150‑1 (MQ=255) gCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGa < 2:1649510/150‑1 (MQ=255) gCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGa < 1:5078929/150‑1 (MQ=255) gCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGa < 1:1899468/150‑1 (MQ=255) ccGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGAt < 2:4453475/150‑1 (MQ=255) tACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACa < 2:5140172/150‑1 (MQ=255) tACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACa < 2:5140189/150‑1 (MQ=255) tACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACa < 1:4384804/150‑1 (MQ=255) ccTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGa < 2:7427696/150‑1 (MQ=255) ccTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGa < 2:7300478/150‑1 (MQ=255) ccTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGa < 2:4468351/150‑1 (MQ=255) gAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACAt < 2:1610864/150‑1 (MQ=255) gAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACAt < 2:1610785/150‑1 (MQ=255) gAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACAt < 1:6865658/150‑1 (MQ=255) tGGACGCAGGATCCGCGTAACCCCTCCCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAg < 2:6358835/150‑1 (MQ=255) tGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAg > 1:3679294/1‑150 (MQ=255) tGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAg < 2:4810865/150‑1 (MQ=255) ggACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAgg < 2:122179/150‑1 (MQ=255) gACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTTAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACACCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAggg < 1:6072982/150‑1 (MQ=255) aCGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAgggg < 2:1265518/150‑1 (MQ=255) cGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGc < 2:2436367/150‑1 (MQ=255) cAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCg < 1:6552512/150‑1 (MQ=255) aGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCTGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGa > 1:5457726/1‑130 (MQ=255) aGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCTGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGa < 2:5457726/130‑1 (MQ=255) tCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcg < 2:4263339/150‑1 (MQ=255) tCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcg < 2:5358386/150‑1 (MQ=255) ccGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcgc < 1:1246559/150‑1 (MQ=255) ccGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcgc < 2:3679294/150‑1 (MQ=255) cgcgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcgcg < 1:4668078/150‑1 (MQ=255) cgcgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcgcg < 2:6296647/150‑1 (MQ=255) cgcgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcgcg < 2:7297204/150‑1 (MQ=255) gcgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCgg < 1:1141003/150‑1 (MQ=255) cgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGc < 2:2776902/150‑1 (MQ=255) cgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGc < 2:2776986/150‑1 (MQ=255) cgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGc < 2:6491067/150‑1 (MQ=255) gTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCGAAGCGGcc < 1:6193404/150‑1 (MQ=255) tAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGccc < 1:4429677/150‑1 (MQ=255) tAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGccc < 1:3140533/150‑1 (MQ=255) tAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGccc < 1:1207610/150‑1 (MQ=255) tAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGccc < 1:2252801/150‑1 (MQ=255) tAACCCCGACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGccc < 1:5218379/150‑1 (MQ=255) gacccccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGGACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCGAAGCGGccc < 2:427030/147‑1 (MQ=38) cgtccccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGccc < 2:5702587/147‑1 (MQ=255) aCCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCGAAGCGGcccct < 2:471242/150‑3 (MQ=255) cccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATc < 2:6822846/150‑1 (MQ=255) cccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATc < 1:1353342/150‑1 (MQ=255) cccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATc < 2:3154391/150‑1 (MQ=255) cgaCCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATcgc < 1:7138349/148‑1 (MQ=255) cTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATcgc < 2:369817/150‑1 (MQ=255) cTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATcgc < 2:3055302/150‑1 (MQ=255) ccGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGac < 2:2692305/150‑1 (MQ=255) gcggCCAGTTTAAGCGGGTCACCGCGTGAACAGCTGCCGCGGCCCGTGTGGGAGCGGCCTTGTGTCGCGATGGGGCCGCACAGCGGCCCCAGCTGTCTTTGCCGCGATACAGACATCGTGGGGCCGCTTCGCGGCCCGATCGCGACACaa < 2:6146631/148‑1 (MQ=37) cACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGc < 1:4962088/65‑1 (MQ=255) cACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGc > 2:4962088/1‑65 (MQ=255) gCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAggg < 1:2569812/90‑1 (MQ=255) aGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcgc > 1:6450152/1‑80 (MQ=255) aGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTcgc < 2:6450152/80‑1 (MQ=255) ttGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCCGCCCCGTCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAAAGCCGGATCAAGGCTCCAGCCCGa > 2:3538144/1‑150 (MQ=38) gtgtCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGCTc > 2:6073334/1‑150 (MQ=255) tCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCAGGAATGCCGGATCACGGCTCCAGCCCGATcccc > 1:1002413/1‑150 (MQ=255) gcgATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCg > 1:6243240/1‑150 (MQ=255) tgctggggCCGCTGTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGc < 2:6895737/116‑1 (MQ=38) tgctggggCCGCTGTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGc > 1:5147388/6‑150 (MQ=255) ctggggCCGCTGTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCaa > 2:396162/4‑150 (MQ=255) tggggCCGCTGTGCGGCCCGAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATcg < 1:5718255/70‑1 (MQ=38) tggggCCGCTGTGCGGCCCGAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATcg > 2:5718255/3‑72 (MQ=38) tggggCCGCTGTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAg > 2:3406060/3‑150 (MQ=255) tggggCCGCTGTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAg > 1:3191300/3‑150 (MQ=255) ggCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATc > 1:6764376/1‑150 (MQ=255) gCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCa > 2:768536/1‑150 (MQ=255) ccGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCAc > 2:2717728/1‑150 (MQ=255) cGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACg > 1:868287/1‑150 (MQ=255) cGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGACCGATCCCCCGCAAGATCACg > 2:3316107/1‑150 (MQ=255) gCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGc > 2:2632544/1‑150 (MQ=255) gCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGc > 1:531854/1‑150 (MQ=255) gCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGc > 1:5587419/1‑150 (MQ=255) gCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGc > 1:5587427/1‑150 (MQ=255) acaGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTg > 2:2474432/1‑150 (MQ=255) | AAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTG > NC_002947/4556820‑4557116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |