| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,130,163 | A→G | 9.6% | intergenic (+140/‑42) | PP_4511 → / → PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,130,163 | 0 | A | G | 9.6% | 618.7 / 39.4 | 209 | intergenic (+140/‑42) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
| Reads supporting (aligned to +/- strand): ref base A (110/79); new base G (17/3); total (127/82) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.80e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.02e-01 | |||||||||||
Only 100 of 211 total aligned reads displayed.
CTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTC > NC_002947/5130020‑5130312 | cTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCTCCAACAGGATGCCCCCGCCGGAAAGTTGTGCAAAACCGGTAGGAGC‑GGGTTTACCCGCGCAAGGGCCg > 2:5853943/1‑150 (MQ=39) tGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGGAAAACCGCGGCAAAAGGATGCCCCCCCCAGAAATTTTTTGAAAAACGGTAGGAGC‑GGGTTTTACCCCGAAACGGCCgg > 1:1084008/1‑150 (MQ=255) gcagTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGGAAAACCGCGCCTAAAGGCTGCCCCCCCCGGAAGGTTGTGCAAAAACAGGAGGTGCGGGGTTTCCCCCCCAAAGGCCCgcccgg > 2:2109263/1‑145 (MQ=255) cagACTTGCCACATAATTTTTTTGCATGAGCCTTAACAATTTGCATTTCCCGGCCCCTACGCGGGTAAACCCGCTCAAACAGGATCCCCCCCCCTTAATTTTGTCAAAAACCTCTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGc < 2:7175650/150‑1 (MQ=19) gTCTTGCGACTGATTGTGTGTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTGCGCGGGTAAACCCGCTCCTCCAGGATGCCCCCGCCTGTCTGTTGTGCAAACCCTGTCGGCGG‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCt < 2:6652561/150‑1 (MQ=37) gTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCt < 2:6036796/150‑1 (MQ=255) gCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGATTGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTagt < 2:5160009/150‑2 (MQ=255) aCAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCACCTACACGATTCCCCCCCCGGAATGTTGTGCAAAACCAGTAGGAGC‑GGGTTTAACCGCCAAAGGGCCGGCACAGCCGGTAGAGAt > 2:2737319/1‑150 (MQ=255) gtTTGCCTGCGGCTTTACACTTGGCCTTGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACCGGATGCCCCCGCCTGATTGTTGTGAAAAACCTGTAGGAGC‑GGGTTAACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCaa < 2:2711939/150‑1 (MQ=38) ggtttACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCTCCTTATTGTTGTGCAAAACCTGTAGGTGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCAt < 2:6119209/148‑1 (MQ=255) tttACACTGTGCCTTTGCCGGCCCCTTCGCGGTTAAACCCGATCCTACAGGATGCCCCCGCCTTATTGTTGTGCAAAACCTGTAGGTGG‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGa < 2:3383034/150‑1 (MQ=38) ttACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCGCCTACAGGATTCCCCCCCCAGAAAGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCCCGAAAGGGCCGGCACTGCCGGTAGAGATCTCCAACAAAGACCCACCATGaa > 2:1120386/1‑150 (MQ=37) tACACTTTTCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGACTGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAac < 2:5430378/150‑1 (MQ=255) tttgcctttgccGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATTCCCCCGCCTGAATGTTGTGCAAAAACTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCCGCACTGCCGGTAGAGATCTCCCTCAAGGACCCACCCAGAACcaccg > 2:6773218/1‑150 (MQ=37) tttgcctttgccGGCCCCTTCGCGGGTAAACCCCCACCAAAAGGGTGCCCCCGCCGGAATGTTTTGCAAAACCGGGAGGAGC‑GGGTTTACCCGCCAAAGGGCCGGCACAGCCAGTAGTGGTCTCCAACAAAGAACCACCAAGAACcaccg > 2:4252877/1‑150 (MQ=255) cGGCCCCTTCGCGGGCAACCCCGCTCCAACTGTCGCCCCCCGCCTTATTGTTGTCCAAACCTTGTTGGCGC‑GGGTTCACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCg < 1:6458402/150‑1 (MQ=255) ggCCCCTTCGCGGGTAAACCCCCTCCAACAGGATGCCCCCCCCGGAATGTTGTGCAAAACCGGTAGGAGC‑GGGTTTTCCCGCGAAAGGGCCGGCCCGGCCGGGAGAGATCTCCCTCAAGGCCCCACCATGAACCACCGCACCGCCCTCgg > 2:4906337/1‑150 (MQ=255) cccTTCGCGGGTAAAACCGCGCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGTAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGcccaccgccc > 2:7409474/1‑143 (MQ=39) ccTTCGCGGGTAAAACCGCTCCTACACGGTGCCCCCGCCGGAAAGTTTTGGAAAACCGGTAGGAGC‑GGGTTTACCCGCGAAAGGGGCGGCACAGCCTGTAGAGATCTCCATCAAGGACCCCCCAAGTACCACCCCACCCCCCGCGgcgcc > 2:7151724/1‑149 (MQ=25) cTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAACTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTATAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCAc > 1:7382287/1‑150 (MQ=255) TCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTTTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCACGGCGCACTg < 2:6261984‑M1/150‑1 (MQ=255) GGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGTGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACAt > 2:3510489‑M1/1‑150 (MQ=255) gtaaacccgctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCAc < 2:6695218‑M2/70‑1 (MQ=255) gtaaacccgctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCAc > 1:6695218‑M2/73‑142 (MQ=255) TAAACCCGCGCCTACCGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTCGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTg > 2:3189156‑M1/1‑150 (MQ=255) ACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACCTTGgcg < 1:6788105‑M1/150‑1 (MQ=255) ACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcg < 1:1113944‑M1/150‑1 (MQ=255) CCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAATGGACGGCACTGCCTGTAGAGATCTCCATCAAGGAGCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc < 2:5016331‑M1/150‑1 (MQ=255) CCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc < 2:911198‑M1/150‑1 (MQ=255) CCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCCCTGCCTGTAGAGATCTCCCGCACGGACCCACCAGGAACCACCGCACCGCCCGCGGCGCACTGCACAGTGgcgcg < 2:5760232‑M1/150‑1 (MQ=255) CCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgcg < 2:4266707‑M1/150‑1 (MQ=255) ccgctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgcg > 2:6054848‑M2/67‑150 (MQ=255) GCTCCTCCCGGTTGCCCCCGCCTTAATGTGGTCCAAAACCTGTCGGCGG‑GGTTTTCCCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCt > 1:4992108‑M1/1‑150 (MQ=255) gctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCa < 1:6121218‑M2/29‑1 (MQ=255) gctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCa > 2:6121218‑M2/65‑93 (MQ=255) gctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCt > 2:1919992‑M2/65‑150 (MQ=255) tcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGt > 1:4378454‑M2/63‑150 (MQ=255) tcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaAGGGGCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGtt > 2:5513130‑M2/62‑150 (MQ=255) CTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAGCCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttc < 2:4242559‑M1/150‑1 (MQ=255) TACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct < 1:6942209‑M1/150‑1 (MQ=255) TACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct < 1:7063057‑M1/150‑1 (MQ=255) TACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct < 1:4071365‑M1/150‑1 (MQ=255) tacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct > 1:6163614‑M2/60‑150 (MQ=255) tacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct > 1:6593798‑M2/60‑150 (MQ=255) tacaggttttgcacaacattcaggcgggggaatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCATGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct > 1:6593729‑M2/60‑150 (MQ=255) ACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttctt < 2:4567154‑M1/150‑1 (MQ=255) CAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttcttc < 1:1650439‑M1/150‑1 (MQ=255) CAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttcttc < 1:4963320‑M1/150‑1 (MQ=255) AGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCAGCAAGGACCCACCGTGAACCTCCGCACCGCCCTCGGCGCACTGCACTTTGGCGCGCTGTGCTTCg < 1:1371681‑M1/150‑1 (MQ=255) GATGCCCCCGCCTTTATTTTGGGCCACTCTTGAAGGAGC‑GGCTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc > 2:6817784‑M1/1‑150 (MQ=255) GATGCCCCCGCCTGAATGTTGTGCAATACCTGTAGGAGC‑GGTTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc > 2:1084008‑M1/1‑150 (MQ=255) GATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc < 1:1539547‑M1/150‑1 (MQ=255) GATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCGGTTCTTCGGc < 2:4815334‑M1/150‑1 (MQ=255) tttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCt > 1:6610982‑M2/53‑150 (MQ=255) tttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCt > 1:5073704‑M2/53‑150 (MQ=255) tttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc > 2:2561729‑M2/53‑148 (MQ=255) tttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc < 1:2561626‑M2/96‑1 (MQ=255) cccccGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTa > 2:7246373/1‑150 (MQ=255) ccccGCCTGCATTTTGCGCCAACCCTGACGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTAc < 2:1774203/150‑1 (MQ=255) gcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTAc < 2:4378454‑M2/101‑1 (MQ=255) cccGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTAcc > 1:3787067/1‑150 (MQ=255) cccGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTAcc > 2:2884411/1‑150 (MQ=255) ccGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCg > 1:7265703/1‑150 (MQ=255) ccGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCg > 1:7381356/1‑150 (MQ=255) gCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGc > 1:5477875/1‑150 (MQ=255) gCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGc > 1:6885955/1‑150 (MQ=255) ccTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCg > 2:3848323/1‑150 (MQ=255) cTGAATGGTGTGCAAAACCTGTAGGTGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGt < 2:3883226/150‑1 (MQ=255) tGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGTACGGAACTTCCTGTATAGATCTCAATCAAGGACACAACATGAACCACCGCACCGCCATCGGCGCACTGCACATTGTCGCGATGTTCTTCGGCCTTACCGGCGTc > 2:1114620/1‑150 (MQ=255) gAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCt > 1:4457167/1‑150 (MQ=255) aTGTTGTGAAAAACCTGTAGGTGG‑GGTTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTc < 1:4509215/150‑1 (MQ=255) gtgCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCaa > 2:3927331/1‑150 (MQ=255) tgCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCaaa > 1:5652286/1‑150 (MQ=255) gCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAAc > 2:6457915/1‑150 (MQ=255) aaaaCCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCgg > 2:3452023/1‑95 (MQ=255) aaaaCCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCgg < 1:3452023/95‑1 (MQ=255) aaaaCCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTg > 2:2504512/1‑150 (MQ=255) aaaCCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTgg > 1:5934705/1‑150 (MQ=255) aaCCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGc > 1:4661315/1‑150 (MQ=255) aCCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGcc > 2:3320109/1‑150 (MQ=255) ccctgtcggcgggggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGcc < 1:850308‑M2/123‑1 (MQ=255) ctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGccac > 2:1385071‑M2/26‑150 (MQ=255) tgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGccacc > 1:198919‑M2/25‑150 (MQ=255) gtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGcca > 1:2286171‑M2/24‑147 (MQ=255) gagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAg < 1:275582‑M2/34‑1 (MQ=255) gagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAgcgc > 1:5342745‑M2/20‑150 (MQ=255) gcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCa > 2:4259334‑M2/18‑150 (MQ=255) gcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCa > 1:4931197‑M2/18‑150 (MQ=255) gcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCa > 2:1276578‑M2/18‑150 (MQ=255) gtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGccc > 2:4181349‑M2/14‑150 (MQ=255) gtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACAGTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGccc > 2:6192993‑M2/14‑150 (MQ=255) ttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCgg < 2:1539547‑M2/139‑1 (MQ=255) acccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCg > 1:5321557‑M2/10‑150 (MQ=255) cccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGa < 1:4228955‑M2/142‑1 (MQ=255) ccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGat > 1:3238206‑M2/8‑150 (MQ=255) cgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGatc < 2:4728372‑M2/144‑1 (MQ=255) cgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGatc > 2:3672948‑M2/7‑150 (MQ=255) gcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGatca > 2:5606887‑M2/6‑150 (MQ=255) gaaGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGatcatc < 1:3915734‑M2/147‑1 (MQ=255) aGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTc > 2:3631015/1‑150 (MQ=255) | CTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTC > NC_002947/5130020‑5130312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |