Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,435,403 C→T 9.7% intergenic (‑88/+73) PP_4769 ← / ← PP_4770 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,435,4030CT 9.7% 881.2 / 61.3 298intergenic (‑88/+73)PP_4769/PP_4770hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (126/143);  new base T (15/14);  total (141/157)
Fisher's exact test for biased strand distribution p-value = 6.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 302 total aligned reads displayed.

GGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGG  >  NC_002947/5435256‑5435551
                                                                                                                                                     |                                                                                                                                                    
 gCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACAcc                                                                                                                                                   <  2:5064270/150‑1 (MQ=255)
  ccTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACAccc                                                                                                                                                  >  2:5114205/1‑150 (MQ=255)
     ggCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGt                                                                                                                                                <  2:1918622/150‑1 (MQ=255)
     ggCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTg                                                                                                                                               <  1:6475903/150‑1 (MQ=255)
        gcACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGa                                                                                                                                            >  2:339862/1‑150 (MQ=255)
          aCGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAAGCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGc                                                                                                                                          >  2:4425309/1‑150 (MQ=255)
          aCGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGc                                                                                                                                          <  2:3141274/150‑1 (MQ=37)
            ggTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCgg                                                                                                                                        <  2:7380596/150‑1 (MQ=37)
             gtgtAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCggg                                                                                                                                       <  1:1556012/150‑1 (MQ=255)
                tagtagAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCA‑TTTTGGCCGGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACCGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTg                                                                                                                                   <  1:3012191/150‑1 (MQ=255)
                     gagGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCcg                                                                                                                               >  2:5316813/1‑150 (MQ=255)
                      agGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTGCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGGCcgc                                                                                                                              >  1:1371221/1‑150 (MQ=255)
                          tCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAg                                                                                                                          >  1:2232349/1‑150 (MQ=255)
                           cTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAgg                                                                                                                         <  1:2891824/150‑1 (MQ=255)
                            tGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAggg                                                                                                                        >  1:4122924/1‑150 (MQ=255)
                             gCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAgggg                                                                                                                       <  1:5195785/150‑1 (MQ=255)
                                  tCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCaa                                                                                                                  <  1:6251448/150‑1 (MQ=255)
                                   cGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGTAGCGGGCGTGCCCGCGAAGGGGCGCaaa                                                                                                                 <  1:3304037/150‑1 (MQ=255)
                                       gAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGc                                                                                                                                      >  1:2188478/1‑125 (MQ=255)
                                         aCAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGccc                                                                                                           >  1:4198383/1‑150 (MQ=255)
                                           aGCGCGAACTTTTTCACCTGGCAACCTAATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGTTAT‑CGCGCTTACACCCGTGGGAGCGGGCTTGCCCGCGAAGGGGCGCAAAGCGccccc                                                                                                         <  1:1941687/150‑1 (MQ=255)
                                             cgcgATCTTGGTCACCTGGGAACCTCAGTTTTGGCCGGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACCGGTAT‑CGCGCGTCCACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCgg                                                                                                       <  2:5933188/150‑1 (MQ=38)
                                               cgATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGaa                                                                                                     <  2:2518485/150‑1 (MQ=255)
                                                gATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGa                                                                                                                                            >  1:2370720/1‑110 (MQ=255)
                                                gATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGa                                                                                                                                            <  2:2370720/110‑1 (MQ=255)
                                                 aTCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAAt                                                                                                   >  2:1490428/1‑150 (MQ=255)
                                                   cTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGc                                                                                                 >  1:1220923/1‑150 (MQ=255)
                                                    tttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGcc                                                                                                >  1:6931802/1‑150 (MQ=255)
                                                    tttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGcc                                                                                                >  2:7232424/1‑150 (MQ=255)
                                                    tttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGcc                                                                                                >  2:551578/1‑150 (MQ=255)
                                                    tttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGcc                                                                                                >  1:4753437/1‑150 (MQ=255)
                                                    tttttCACCTGGGAACCTCATTTTGGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTCCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGcc                                                                                                <  1:848989/150‑1 (MQ=255)
                                                      tttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCcag                                                                                              >  2:3328908/1‑150 (MQ=255)
                                                        tCACCTGGGTACCTCATTTTTGGCCTGGAGTGGC‑GGGGGGCTGCTGCGCAGTCCTTCGCGGACACGCCCGCTCCCACCGTTAT‑CGCGCGTACACCCGTGGGCGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGATATGCcagca                                                                                            <  1:1165719/150‑1 (MQ=38)
                                                        tCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACCGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCcagca                                                                                            <  1:1840588/150‑1 (MQ=255)
                                                            cTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTAt                                                                                        >  1:1438789/1‑150 (MQ=255)
                                                              gggAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGc                                                                                      >  2:2822673/1‑150 (MQ=255)
                                                                gAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCa                                                                                    <  2:4586160/150‑1 (MQ=255)
                                                                   ccTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGAc                                                                                 >  1:4590659/1‑150 (MQ=255)
                                                                     tCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCt                                                                               >  1:3577812/1‑150 (MQ=255)
                                                                       aTTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGt                                                                             <  1:2822673/150‑1 (MQ=255)
                                                                        tttttGGGCTGGTGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACTCGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTc                                                                            <  2:2475235/150‑1 (MQ=255)
                                                                              gCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCATACCTGTCAGACGt                                                                      <  2:5705594/150‑1 (MQ=255)
                                                                              gCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGt                                                                      <  2:6945654/150‑1 (MQ=255)
                                                                               ccTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAA‑CGCGCGTACACCCCTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCCGAAAAGCCAGCAGTATGCCAGACCAGTCCCACGTa                                                                     >  1:4019147/1‑150 (MQ=38)
                                                                                cTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTaa                                                                    <  1:7174766/150‑1 (MQ=255)
                                                                                cTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTaa                                                                    <  2:6661113/150‑1 (MQ=255)
                                                                                cTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTaa                                                                    >  2:4976017/1‑150 (MQ=255)
                                                                                cTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTaa                                                                    <  1:3513351/150‑1 (MQ=255)
                                                                                cTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGGACACCCGTGGGAGCGGGCGTGCCCCCGGAGGGGCGCAAAGCGCCCCCGGCACTGCCCCCCCTAAGCCAGACCAGTCCGACGTaa                                                                    >  1:1900179/1‑150 (MQ=255)
                                                                                 tGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACCCCCGCACCCACACGTAT‑CGCGCGTACACCCGGGGGCGCGGGCGTGCCCGCGAACGGGCGCCAAGCGCCCCCCGAAATGCCCGCCGTATGCCAGACCAGTCAGACGGAAg                                                                   >  1:868405/1‑150 (MQ=255)
                                                                                   gAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCg                                                                                                                                         >  2:6012705/1‑78 (MQ=11)
                                                                                   gAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCg                                                                                                                                         <  1:6012598/78‑1 (MQ=11)
                                                                                     gTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtc                                                               <  2:2005060/150‑1 (MQ=255)
                                                                                     gTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtc                                                               <  1:5114205/150‑1 (MQ=255)
                                                                                        cc‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtc                                                            <  2:4906983/150‑1 (MQ=255)
                                                                                           ggggggCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCCCAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGGCCTGTCAGACGTAAGAATcgtcgt                                                          >  2:2500158/1‑150 (MQ=255)
                                                                                               ggCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCga                                                      <  2:6534673/150‑1 (MQ=255)
                                                                                                 ctgctgCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCgaga                                                    <  1:4869007/150‑1 (MQ=255)
                                                                                                  tgctgcGCAGACCTTCGCGGACACGCCCGCTCCCACCGGTAT‑CGCGCGTACACCCGTGGGAGCTGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGagaa                                                   <  1:2028031/150‑1 (MQ=255)
                                                                                                  tgctgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGagaa                                                   <  1:5254292/150‑1 (MQ=255)
                                                                                                    ctgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGagaaga                                                 >  1:6081784/1‑150 (MQ=255)
                                                                                                     tgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAgaagaa                                                <  2:3978378/150‑1 (MQ=255)
                                                                                                     tgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAgaagaa                                                <  1:3114027/150‑1 (MQ=255)
                                                                                                      gcgcAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAAc                                               <  1:4336385/150‑1 (MQ=255)
                                                                                                        gcAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAACTGCCAGCAGTATGCCAGACCTGTCCGACGTAAGAATCGTCGTCCGAGAAGAAccc                                             >  1:554591/1‑150 (MQ=255)
                                                                                                        gcAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAAccc                                             >  1:6602646/1‑150 (MQ=255)
                                                                                                         cAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCa                                            <  2:4252766/150‑1 (MQ=255)
                                                                                                          gccccTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCAc                                           >  2:7308085/4‑150 (MQ=21)
                                                                                                            cccTTCGCGGGCACGCCCGCGCCCACGGGGGTACCCGCG‑ATACCGGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCGGTCAGCCGGAAGAATCGTCGGCCGAGAAGAACCCACCg                                         >  2:623388/2‑150 (MQ=21)
                                                                                                              cTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTc                                       >  1:7187250/1‑150 (MQ=255)
                                                                                                              cTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTc                                       <  1:4378644/150‑1 (MQ=255)
                                                                                                               ttCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCa                                      >  2:1737486/1‑150 (MQ=255)
                                                                                                                 cgcgGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATc                                    <  2:4111883/150‑1 (MQ=255)
                                                                                                                  gcgGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCg                                   >  2:1580713/1‑150 (MQ=25)
                                                                                                                  gcgGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCg                                   >  2:6051073/1‑150 (MQ=255)
                                                                                                                   cgGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCcagca                                                                                            >  1:4966566/1‑92 (MQ=255)
                                                                                                                      acacGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGc                               <  1:3753916/150‑1 (MQ=255)
                                                                                                                        gtgCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCa                             >  1:6583424/3‑150 (MQ=37)
                                                                                                                          gCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCaaa                           >  2:4807122/1‑150 (MQ=25)
                                                                                                                          gCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCaaa                           >  2:3761302/1‑150 (MQ=255)
                                                                                                                          gCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCaaa                           >  1:636913/1‑150 (MQ=255)
                                                                                                                            ccGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAac                         >  1:5702115/1‑150 (MQ=255)
                                                                                                                              gCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAacca                       <  1:2684547/150‑1 (MQ=255)
                                                                                                                               cTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAaccac                      >  1:697703/1‑150 (MQ=37)
                                                                                                                                tCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAaccacc                     >  2:6789513/1‑150 (MQ=37)
                                                                                                                                  ccACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGt                   >  1:1017718/1‑150 (MQ=255)
                                                                                                                                   cacaGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTc                  >  2:586475/1‑150 (MQ=255)
                                                                                                                                   cacaGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTc                  >  1:4829322/1‑150 (MQ=255)
                                                                                                                                   cacaGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTc                  >  1:3942094/1‑150 (MQ=255)
                                                                                                                                   cacaGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAGCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAACTCCACCGTc                  >  2:1065296/1‑150 (MQ=255)
                                                                                                                                    acaGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCg                 >  1:4665522/1‑150 (MQ=255)
                                                                                                                                    acaGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCg                 >  1:4279969/1‑150 (MQ=255)
                                                                                                                                      aGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAgaagaa                                                >  2:611429/1‑117 (MQ=255)
                                                                                                                                      aGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAgaagaa                                                <  1:611429/117‑1 (MQ=255)
                                                                                                                                           t‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATc          >  1:1144097/1‑150 (MQ=255)
                                                                                                                                                 cgTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGccc     <  1:2733748/150‑1 (MQ=255)
                                                                                                                                                 cgTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGccc     <  2:2193685/150‑1 (MQ=255)
                                                                                                                                                 agTACAACCGAGGTAGCGGGCGTGCCCGCGAAGTGGCGCAAAGCTCCCCCGGAAATGCCAGCAGTATCACAGACCTGTCAGACGTAAGAATCCAACTCCGAGAAGAACCCACAGTCATCGCTGCAAAAACCACCGTCGGCGTATCAGcac     >  2:2079877/2‑148 (MQ=255)
                                                                                                                                                    acacCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTgg  <  2:1371221/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCC‑GGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGG  >  NC_002947/5435256‑5435551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑