Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,542,066 C→T 14.9% intergenic (+46/+57) nadE → / ← PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,542,0660CT14.9% 361.1 / 48.7 148intergenic (+46/+57)nadE/PP_4870NH(3)‑dependent NAD(+) synthetase/azurin
Reads supporting (aligned to +/- strand):  ref base C (51/68);  new base T (7/14);  total (66/82)
Fisher's exact test for biased strand distribution p-value = 4.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.83e-01

Only 100 of 159 total aligned reads displayed.

ATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGT  >  NC_002947/5541917‑5542215
                                                                                                                                                     |                                                                                                                                                     
aTGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAc                                                                                                                                                       <  2:5549213/150‑1 (MQ=255)
aTGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAc                                                                                                                                                       <  1:3564079/150‑1 (MQ=255)
aTGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAc                                                                                                                                                       <  1:3205221/150‑1 (MQ=255)
    cTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCCCGACAACCAGGGTGAACCCAc                                                                                                                                                   >  2:4619169/1‑150 (MQ=255)
     ttCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATAAGAGGGTGAAcccccc                                                                                                                                                  >  2:1476290/1‑150 (MQ=255)
     ttCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTGGCCCGCGCCTAGGTGGGGGGACCCAcc                                                                                                                                                  >  1:4162532/1‑150 (MQ=255)
      tCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTGACCCGCCAAAAACGGGGTGGACCCCCCg                                                                                                                                                 >  2:2566368/1‑150 (MQ=255)
              gggCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTc                                                                                                                                         <  2:7021840/150‑1 (MQ=255)
              gggCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACCCaatg                                                                                                                                         >  2:1571746/1‑147 (MQ=255)
                 cAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgcg                                                                                                                                      <  2:5678685/150‑1 (MQ=255)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTCCCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATACGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     <  2:4038140/150‑1 (MQ=255)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:1717864/150‑1 (MQ=25)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:2294925/150‑1 (MQ=25)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:522313/150‑1 (MQ=25)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:5334277/150‑1 (MQ=25)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:5334414/150‑1 (MQ=25)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:542946/150‑1 (MQ=25)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     <  2:4370029/150‑1 (MQ=255)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     <  1:5512352/150‑1 (MQ=255)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     <  1:4956411/150‑1 (MQ=255)
                  aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATACGCgg                                                                                                                                     <  2:1662057/150‑1 (MQ=255)
                   gCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCggg                                                                                                                                    <  2:6491413/150‑1 (MQ=255)
                    ccGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGt                                                                                                                                   <  2:4528426/150‑1 (MQ=255)
                    ccGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGt                                                                                                                                   <  2:7233694/150‑1 (MQ=255)
                       gTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     <  2:4270111/145‑1 (MQ=255)
                       gTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     >  1:4270111/1‑145 (MQ=255)
                       gTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGaa                                                                                                                                >  2:4648403/1‑150 (MQ=255)
                           aCCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCCACGCATTCGCGGGTGAACCCg                                                                                                                            >  2:488346/1‑150 (MQ=255)
                               ggCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACCAGGGTGAACCCACCGACGCATTCGCGGGTGAAACCGCTcc                                                                                                                        >  2:2374291/1‑150 (MQ=255)
                                gCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCt                                                                                                                       <  2:6059133/150‑1 (MQ=255)
                                     gTTCGACACCATCGCCGCCACCCCCCGAACCACCCAGCACACGCGCGAACTGCGGTTCGCTCCTTTTTACGGGGCCTGCTGGAGGGGTTTCACCCGCTAATACTAGGTTGAACCCACCGACGAATTCGCGGGTGAACCCGCTCCTGCAgg                                                                                                                  <  2:4436251/150‑1 (MQ=255)
                                         cacacCATCGCCGCCACCAACCGCACGACCCAGCACACGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGCCGCGGGTTCACCCGCTAATACGCGGGTGAACCCACCGACGCATCGGCGGGTGACCCCGCTCCTGCAGGGTTc                                                                                                              <  2:1645715/149‑1 (MQ=255)
                                           catcatCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCGAATACGAGGGTGGACCCACCGACGCAATCGCGGGTGAACCCCCGCCGGCCggggtggc                                                                                                            >  2:5256925/1‑145 (MQ=255)
                                             tcatcGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTGACCCGCGCATAAGAGGGTGGACCCCCCCACGCCTTGGCGGGTGTAACCGCGCCGGCAggggtgggcg                                                                                                          >  1:4546799/1‑143 (MQ=255)
                                              cagcggcgCCACCTCCCCCACGCCCCCGCCCCCGCGCGACCGGCCGTGCGCTCCTTGATATGGGGCCTGCAGGAGGGGGTGCACCCGCTAAGACGCGGGGGACCCCACCGCCGCATGCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGt                                                                                                         <  2:5119424/144‑1 (MQ=255)
                                                tggtcgCCACCTACCCCACGACCCCCCACACGCGCTACGTGCGGTTGGCTCCTTTTTATGGGGCCTGCCGGCGGGGGTTCCCCGGCGAATCCGCGGGTCAACCCCCCGCCGCTTGGGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                                                       <  2:123181/148‑1 (MQ=255)
                                                tcgtcgCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGCGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                                                       >  2:3214287/1‑150 (MQ=255)
                                                  gtcgCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCCCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     >  2:254552/1‑118 (MQ=18)
                                                     gCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:5087222/115‑1 (MQ=18)
                                                     gCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     >  1:5087222/1‑115 (MQ=18)
                                                      ccACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCGTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCGCAAACGAGGGGGGACCCCCCCCCGCAATCGCGGGTGGACCCCCTCCGGGAGGGGTCGCCGGCAGCCatt                                                                                                 >  2:3985134/1‑150 (MQ=255)
                                                          cTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     >  1:3117100/1‑110 (MQ=255)
                                                          cTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                     <  2:3117100/110‑1 (MQ=255)
                                                           tACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     <  2:3980811/109‑1 (MQ=17)
                                                           tACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                     >  1:3980811/1‑109 (MQ=17)
                                                           tACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTGACCCCCCAAAACGAGGGTTTACCCACCGCCCCAGTCGCGGGGGTACCCCCGCCAGCCGGGGTGGCCGGCCGCCGTTGGTTa                                                                                            >  2:346898/1‑150 (MQ=255)
                                                                cccgccccACCACACGCGCGAAGGGCGGTTCGCTCCTTTATACGGGCCGGGCAGGCGCGGTTCCACCCGCGAATCGGCGGGTGAACCCACCGCCGCATTCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGa                                                                                       <  2:822107/145‑1 (MQ=255)
                                                                cAAGACCCTGCACACGCGCGAACTGCCGTTCGATCCTTGATACGGGGCCTGCTGGAGCGGGTTCACCCGCGAATACTTGGGTTAACCCACCTACGCTTTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGa                                                                                       <  2:2345496/150‑1 (MQ=38)
                                                                            caAGCGCGAACGGCCGTTCGCTCCTTTATATGTGGCCTGCAGGAGGGGGTTCACCCGCGAATACGAGGGTTAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGc                                                                           <  2:6366829/150‑1 (MQ=38)
                                                                               gcccccaCTGCCGTTCCCTCATTTATATGGGGCCGGCTGGAGCGGTTCCACCCGCCAATACGCGGGTGACCCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCtt                                                                        <  1:1129412/144‑1 (MQ=25)
                                                                                 gcgAACTGCCTTTCGCTCCTTGATAAGTGGCCTGCTGGAGGGGGTTCACCCGCGAATACGTGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtc                                                                      <  1:7347620/150‑1 (MQ=255)
                                                                                 gcgAACTGCCGTTCGCTCCTTTATATGTGGCCTGCTGGAGCGGGTTCACCCGCTAATACGCGGGTTAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtc                                                                      <  2:3393853/150‑1 (MQ=39)
                                                                                  cgAACTGCCGTTCGCTCCTTGATACGGGGCCGGCAGGAGCGGGTCCACCCGCGAATACGTGGGTGACCCCACCGCCGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtca                                                                     <  2:2259685/150‑1 (MQ=37)
                                                                                        gCCGTTCGCTCCTTGACACGTGGCCTGCAGGAGCGGGTACACCCGCGACTCCGAGGGTGAACCCACCGCCGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCATTGATTACTTGACGATGACCTTGCCTTTCATCATCg                                                               <  2:4270051/150‑1 (MQ=38)
                                                                                         ccGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTAACCCCCCAAAAAGATGGTTAAACCAACCACGCAATAGCGGGTGAACCCCCACCGGCAGGGTTCGCCGGCACCCATTTATTAAATTAAGATGAACATTCCATTAATCATAga                                                              >  2:3495908/1‑150 (MQ=255)
                                                                                          cGTTCGCTCCTTGATACGTGGCCTGCAGGAGCGGGTTCACCCGCTAATACGCGGGTGAACCCACCGACGCATGCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCgag                                                             <  2:2269096/150‑1 (MQ=255)
                                                                                                     ggATAAGTGGCCGGCAGTAGCGGGGTCAGCCGCTATTACTAGGGTGAACCCACCGAGGCATGGGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGGCTTTGATTAGTTGACGATGACCTTGCCTTTCATCTTCGAGATGTGGCCCgg                                                  <  2:4759394/149‑1 (MQ=255)
                                                                                                         ccggggCCTGCTGGCGCGGGTTCACCCGGTAATCCGGGGGGGACCCCCCGGCCGCATTGGGGGGTGACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAg                                              <  1:4913335/146‑1 (MQ=255)
                                                                                                          cggggccggccGGCGCGGGTTCCCCCGCGAATCCGCGGGTGCCCCCACCGACGCCGGCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAgg                                             <  2:4678995/147‑1 (MQ=255)
                                                                                                          cgccgccggccgGCGCGGGGCCCCCCGCGACTCCGCGGGTGCACCCACCGCCGCAGGCGCGGGGGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCCTCATCGAGAGGTGGCCCGGGAAgg                                             <  2:5724388/146‑1 (MQ=255)
                                                                                                              gCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCAt                                                                                                                                           <  1:6299842/52‑1 (MQ=255)
                                                                                                                     ggcgggggTTCACCCGCTAATACGTGGTTTACCCCACCGACGCATTCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                  <  1:2305563/145‑1 (MQ=255)
                                                                                                                      gcgggggTCCCCCCGCGAATACGCGGGTGACCCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGc                                 <  2:3762592/146‑1 (MQ=39)
                                                                                                                      gAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCCACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCGTTGATTACTTGTCGATGACCTTGCCTTTCATCATAGAGATGTGGCCCGGGAAGGTGCAGAAGAAGc                                 >  2:2757502/1‑150 (MQ=255)
                                                                                                                       tgggggTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCt                                <  1:2391734/147‑1 (MQ=255)
                                                                                                                       aGCGGGTACACCCCCCAAAACGCGGTACAACCCACCTACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCt                                <  2:7039242/150‑1 (MQ=255)
                                                                                                                        gggggTTCACCCGCGAATCCGCGGGTGACCCCACCGACGCATGCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                               <  1:6756091/148‑1 (MQ=255)
                                                                                                                        gCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                               <  2:5164822/150‑1 (MQ=255)
                                                                                                                        gCGGGTACACCCGCGAATACGAGGGTCAACCCACCGACGAATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                               <  2:1835592/150‑1 (MQ=255)
                                                                                                                            gTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                           >  2:929464/1‑150 (MQ=255)
                                                                                                                            gTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                           >  1:2127910/1‑150 (MQ=255)
                                                                                                                             ttCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                          <  1:5450829/150‑1 (MQ=255)
                                                                                                                                aCCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                  >  1:1102443/1‑139 (MQ=21)
                                                                                                                                aCCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc                       >  2:1435426/1‑150 (MQ=25)
                                                                                                                                aCCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc                       >  2:6134975/1‑150 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCa                                                                                                                    <  1:5174832/55‑1 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAggc                                                                                                                 <  1:7184210/58‑2 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAggc                                                                                                                 >  2:7184210/1‑57 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCCTCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                     >  2:1085133/1‑150 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTa                             >  2:3141033/1‑142 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                     >  1:7329282/1‑150 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                     >  1:1824776/1‑150 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                     >  1:7050781/1‑150 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                     >  1:3566633/1‑150 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCATTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                     >  2:3350257/1‑150 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGACTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                     >  1:2428556/1‑150 (MQ=255)
                                                                                                                                    gctaaTCCGTGGGTGCCCCCCCCGCCGCATGGGCGGGGGCACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCg                   <  1:3812529/147‑1 (MQ=255)
                                                                                                                                    gcgAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCg                   >  1:6424253/1‑150 (MQ=255)
                                                                                                                                        aTACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCtt               <  2:5568306/150‑1 (MQ=255)
                                                                                                                                         tACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCCTCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTc              <  2:6897519/150‑1 (MQ=255)
                                                                                                                                            gcgggTGAACCCACCTACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg           <  2:3717102/148‑1 (MQ=255)
                                                                                                                                            gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg           >  1:5508061/1‑150 (MQ=255)
                                                                                                                                            gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg           >  2:4144575/1‑150 (MQ=255)
                                                                                                                                               ggtgccccccccGCCGCATGCGGGGGTCAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCtt        <  1:1571746/144‑1 (MQ=255)
                                                                                                                                               ggTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCtt        <  2:5968311/150‑1 (MQ=255)
                                                                                                                                               ggTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCtt        >  2:1336504/1‑150 (MQ=255)
                                                                                                                                                 ggaccccacccaCGCATCCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTgg      <  1:2761148/146‑1 (MQ=255)
                                                                                                                                                   aaCCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGaa    <  2:4162532/150‑1 (MQ=255)
                                                                                                                                                   aaCCCACCCACGCATTCGCGGTTTACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGaa    <  1:1476290/150‑1 (MQ=255)
                                                                                                                                                     cccACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGATGTAGTCACCACCGGCTTCCAGCTTGGAAgt  >  2:844128/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
ATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGT  >  NC_002947/5541917‑5542215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: