| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,784 | G→C | 18.8% | intergenic (‑179/+55) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,784 | 0 | G | C | 18.8% | 460.9 / 96.9 | 191 | intergenic (‑179/+55) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base G (69/84); new base C (13/23); total (82/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.47e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
CAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGC > NC_002947/5902636‑5902933 | cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGa > 2:4220174/1‑150 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg < 1:6637807/150‑1 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGTCGATGCAc > 1:2437723/1‑150 (MQ=255) tGAAGGGGTTTTGCGCCTGGCTTGAGGGCTATAGTAGTGAGGCGGGATTATTCTTAAAATTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAt < 2:1594211/150‑1 (MQ=255) tGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAt > 1:732056/1‑150 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 2:5625998/150‑1 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc < 1:852100/150‑1 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAAAAGGTGGTCGATGCACCATCGc > 1:1628247/1‑150 (MQ=255) gTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTc < 1:7171909/150‑1 (MQ=37) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:2457644/150‑1 (MQ=37) tGCGCCTGGCTTGCGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:3237718/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTCAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:1884289/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:3862978/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5664134/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5348723/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5145820/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:3330594/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:2897629/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:2762550/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:6654162/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:4487410/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:4539525/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTGAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:6373396/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGAAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:2471874/150‑1 (MQ=255) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCggg < 2:423356/150‑1 (MQ=255) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa > 2:471562/1‑150 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATACCCAGTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGACTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 2:5598487/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 1:976594/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 2:5969916/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAccc < 1:6365762/150‑1 (MQ=255) tGATGGCTATAGTAGTGAGGCTGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACTCGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCt < 2:5697903/150‑1 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAAGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCCCTccaa > 2:26325/1‑148 (MQ=255) cAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCCCGAATAAGGTGGTCGAATCACCAACGCAATAGCCGGTAAAACCCCTccaaac > 1:4718022/1‑146 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAACCGCTCCTACCa > 2:2315489/1‑150 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAACCCAATCGCGGGTAAACCCGCTCCTACCa > 2:1470135/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:4842263/150‑1 (MQ=255) gagtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATACCCATTTAAGAGAACCCGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:4842836/149‑1 (MQ=255) tagtGAGGCGGTATTATTCTTAAAAATCCTGTTTAAGAATTTTTATAAAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCTTTGGTGCATCGACCACCGTATTCGGGGTTAAACCCGCTCCTACCAGAGGc < 2:1857879/150‑1 (MQ=17) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGc > 2:1746875/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGc‑cc > 2:6352433/1‑149 (MQ=255) aGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCCCGCATACCGTGGTCGATTGACCAAAGCAATAGCCGGGAAAACCCCGCCAACCACGGGc‑ccgaa > 1:3421917/1‑146 (MQ=255) gCGTGATTATTATTAAAAATAATGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGGGGGTTTACCCGCTAATACGGTGGTCGTTGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATgg < 1:5462321/150‑1 (MQ=38) gCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTACGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAGGGTGGTCGATGCCCCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGC‑CATATgg < 2:4720969/150‑1 (MQ=38) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc > 1:2651652/1‑126 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 2:2651652/126‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATgg < 2:2016081/150‑1 (MQ=255) attCTTAAAAATATTGTTTAATATTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGGGTGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAg < 2:5324452/150‑1 (MQ=38) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAACGTGGTCGATGCACCATCGCAATAGCGGGTAAACCCGCTACTAACAGGGGC‑CAAATGGGCCTTCAgg > 1:2965699/1‑150 (MQ=39) tCTTAAAAATACTGTTTAATAATTTTTATATAACCAATTAAGATAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGc < 2:5488946/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGCATACGGTGGTCGATGCACCATCGCAGTCGCGGGTAAACCCCCTCCGACCCGGGGC‑CATATGGGCCGTCAGGCgt > 2:3132362/1‑150 (MQ=39) aaaaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACGGTGGTCGATTCACCAACCCAATAGCGGGTAAACCCCCTCCTACCAGGGGC‑CATATGGGCCTTAAGGCgggt > 2:3275768/1‑150 (MQ=38) tACTGTTCAAGAATTTTTATATAACCTTTTAAGACACCACGCCTGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGATGCACCTTCGCATACGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTg < 2:2032988/150‑1 (MQ=37) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGGTTCTGCGGCt > 2:3471123/1‑150 (MQ=255) aaGAATTTTTATAAACCCATTTAAGACAACCCGCCTCTGGTAGGAGCGGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc < 2:852880/150‑1 (MQ=38) ttttATATAACCATTTAAGAGAACCCGCCTCTGGTTGGCGCGGGTTTACCCGCTAATAGGGGGGTCGATGCACCATCGCATGCGGGGTAAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCt < 1:4682749/150‑1 (MQ=255) ttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCt < 2:7336955/150‑1 (MQ=255) ttATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:3925841/150‑1 (MQ=255) tataACCATTTAAGAGAACACGCCTGTGGTCGGAGCGGTTTTACCCGCGAATCGGGTGGTCGATGCACCAGCGCATGCGCGGGAAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc < 1:1711364/150‑1 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCGCGAATACGGTGGTCGCTGCACCATAGCATTGGCGGGTAAACCCGCTCCAACCACGGGG‑CCTATTGGCCTTCCGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc > 1:1159999/1‑150 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCCCGAATAAGGTGGTCGATTCACCATCGCATTAGCGGGTAAACCCGCTCCGAACAGGGGC‑CCGAATGGCCATCCTGCGTGTTTCTGCGGCTCGCGGATCTTGTAc > 1:2310966/1‑150 (MQ=255) aaaaCCATTTAAGACAACCCGCCTCTGTTTGGAGGGGGTTTCCCCGCTAATAGGGTGGTCGAGGCACCTGCGCATGCGCGGTAAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAcc < 1:3947399/148‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CAGATGGGCCTGCAGGCGTGTTTCTGCGGCTCGCGGCTCGTGTACCAg > 2:5277768/1‑150 (MQ=255) aaCCATTGAAGACAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:3768702/150‑1 (MQ=255) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGTCGATGCACCATCGCATTAGCGGGTAAACCCGCTCCTAACAGGGGC‑CCAATGGGCCTTCAGGCGTGTTTCGGCGGCTCGCGGATCTTGTACCAGGCCAc > 2:2086079/1‑150 (MQ=255) agaACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAg < 2:6804490/150‑1 (MQ=255) cGCCTCTTGTTGGCGGGGTTTTACCCGCTAATAGGGTGGTGGATGCACAATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCgg < 1:890037/150‑1 (MQ=255) gCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGTCGCTGCACCATCCCCGTCGCGGGTAAACCCCCACCTACCAGGGGC‑CCGATGGGCCGTCAGGCGTGTTTCTGCGGCGCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGc > 2:194560/1‑150 (MQ=255) ccTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCa < 2:2090009/150‑1 (MQ=255) ctctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGTGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 2:6706239/150‑1 (MQ=255) ctGGTAGGAGCGGGTTTACCCGCGAATAAGGGGGTCCATGCACAAAAGGAATCGCGGGGAAACCCCCGCCCCCCCGGGGCGCGTA‑GGGCCTTCAGGCGGGTTTCGGCGGCACCCGGCTCGTGGTCCCGGGCCGGGACAGCGGCGGCCggg > 2:57923/1‑149 (MQ=255) gTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:1064673/150‑1 (MQ=255) aGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 1:6097106/150‑1 (MQ=255) gCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTAGCGGGTAAACCCGCTCCTACCAGGGGC‑CAAATGGGCCTTCCGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCCGGAACAGCAGCg > 1:6841647/1‑150 (MQ=39) ggTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa < 2:7275917/150‑1 (MQ=255) aCCCGCGAATTGGGGGGTCGCTGCACCTTCGCTTTGGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg < 1:1341114/150‑1 (MQ=255) aCCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg < 2:1826704/150‑1 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:4776911/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1510834/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1819314/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt < 1:609056/150‑1 (MQ=255) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:4148302/102‑1 (MQ=17) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:4148434/102‑1 (MQ=17) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg > 1:4148302/1‑102 (MQ=17) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg > 1:4148434/1‑102 (MQ=17) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:3035471/1‑150 (MQ=37) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:75136/1‑150 (MQ=37) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:2137069/1‑150 (MQ=37) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:3076854/1‑150 (MQ=25) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:1221238/150‑1 (MQ=255) gcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:2547147/1‑150 (MQ=37) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:1094163/1‑150 (MQ=255) aaTACGGTGGTCCATCCACAATCCAATTCGCGGTAAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 1:2208377/150‑1 (MQ=255) tACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg > 2:6079435/1‑150 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:2437723/150‑1 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:3197298/150‑1 (MQ=255) cGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgat > 2:1673293/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCACCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 1:1010944/1‑150 (MQ=255) tCGATGCACCATCGCTTTCGCGGTTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 1:6916833/150‑1 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc > 2:6401791/1‑150 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGc > 2:2879722/1‑150 (MQ=255) | CAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGC‑CATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGC > NC_002947/5902636‑5902933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |