| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,787 | G→C | 18.6% | intergenic (‑182/+52) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,787 | 0 | G | C | 18.6% | 438.2 / 101.6 | 194 | intergenic (‑182/+52) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base G (68/85); new base C (12/24); total (85/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-03 | |||||||||||
Only 100 of 196 total aligned reads displayed.
GAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAA > NC_002947/5902638‑5902936 | agGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGc < 2:3014167/150‑1 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc < 2:5490110/150‑1 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGTCGATGCAc > 1:2437723/1‑150 (MQ=255) tGAAGGGGTTTTGCGCCTGGCTTGAGGGCTATAGTAGTGAGGCGGGATTATTCTTAAAATTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAt < 2:1594211/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 2:2571112/150‑1 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAAAAGGTGGTCGATGCACCATCGc > 1:1628247/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCCTCGCAt > 1:7275917/1‑150 (MQ=255) gTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTc < 1:7156023/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg < 1:4495857/150‑1 (MQ=255) tGCGCCTGGCTTGCGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:3237718/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAACATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:6373628/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:2897629/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5348723/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5145820/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5664134/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:6844708/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:5622860/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGATGGTGCATCGACCACCGTATTCGCgg < 1:7426910/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGAAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:2471874/150‑1 (MQ=255) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCggg < 2:423356/150‑1 (MQ=255) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa > 2:471562/1‑150 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 1:976594/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 2:5969732/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAccc < 1:6365762/150‑1 (MQ=255) cAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCCCGAATAAGGTGGTCGAATCACCAACGCAATAGCCGGTAAAACCCCTccaaac > 1:4718022/1‑146 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAACCCAATCGCGGGTAAACCCGCTCCTACCa > 2:1470135/1‑150 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCCAAAAACGTGGGCGATGCACCATAGCAATCGCGGGTAAAACCCCTCCGACCa > 2:2455220/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:4842263/150‑1 (MQ=255) gagtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATACCCATTTAAGAGAACCCGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:4842836/149‑1 (MQ=255) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGc > 2:1746875/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGccc > 2:6352433/1‑149 (MQ=255) gCGTGATTATTATTAAAAATAATGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGGGGGTTTACCCGCTAATACGGTGGTCGTTGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg < 1:5462321/150‑1 (MQ=38) gCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTACGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAGGGTGGTCGATGCCCCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATgg < 2:4720969/150‑1 (MQ=38) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc > 1:2651652/1‑126 (MQ=255) ggtattattCTTAAAAATACTTTTTAAGAATTTTTATATAACCATTTAATAGAACACGCCTCTGGTTGGAGGGGTTTTACCCGCTAATAGGGTGGTCGATGCCCCATCGAATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGc < 2:2678195/147‑1 (MQ=255) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCGCGAATAACGTGGTCGATTCACCAACCCAGTAGCCGGGAAAACCCCGCCAACCCCGGGCCCGATGGGCCGGCAgg > 1:3804856/1‑150 (MQ=255) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAACGTGGTCGATGCACCATCGCAATAGCGGGTAAACCCGCTACTAACAGGGGCCAAATGGGCCTTCAgg > 1:2965699/1‑150 (MQ=39) tCTTAAAAATACTGTTTCAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc < 2:1944431/150‑1 (MQ=255) tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc > 2:2029102/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCGCGAATACGGTGGTCGATGCACCAACGCAGTCGCGGGTAAAACCGCTCCAACCAGGGGCCCTATGGGCCGTCAGGCgt > 1:4158811/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGCATACGGTGGTCGATGCACCATCGCAGTCGCGGGTAAACCCCCTCCGACCCGGGGCCATATGGGCCGTCAGGCgt > 2:3132362/1‑150 (MQ=39) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt > 2:4164623/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCGTCAGGCgt > 2:2089450/1‑150 (MQ=255) aaaaaTACTGTTTAAGATTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGCGGGTTTACCCGCGAATACGGGGGTCGATGCACCATCGCATTGGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgtgt < 2:2007111/150‑1 (MQ=255) aaaaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACGGTGGTCGATTCACCAACCCAATAGCGGGTAAACCCCCTCCTACCAGGGGCCATATGGGCCTTAAGGCgggt > 2:3275768/1‑150 (MQ=38) tACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGTTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTg < 2:2045899/150‑1 (MQ=255) aCTGTTTAATAATTTTTATATAACCTTTTAAGCCAACCCGCCTCTGGTAGGAGCGGGTTTACCCGCTAATAGGGTGGTCGATGCACCATCGCATTCGGGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 2:1876561/150‑1 (MQ=38) aCTGTTTAATAATTTTTATATAACAATTTAAGACAACCCGCCTCGGGTTGGAGGGGGTTTACCCGCGAATACGGGGGTCGCGGCACCATCGCATTCGCGGGAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:471562/150‑1 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGGTTCTGCGGCt > 2:3471123/1‑150 (MQ=255) aaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc > 2:6028946/1‑150 (MQ=255) aaGAATTTTTATAAACCCATTTAAGACAACCCGCCTCTGGTAGGAGCGGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc < 2:852880/150‑1 (MQ=38) ttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCt < 2:7336955/150‑1 (MQ=255) ttATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:3925841/150‑1 (MQ=255) tataACCATTTAAGAGAACACGCCTGTGGTCGGAGCGGTTTTACCCGCGAATCGGGTGGTCGATGCACCAGCGCATGCGCGGGAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc < 1:1711364/150‑1 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCGCGAATACGGTGGTCGCTGCACCATAGCATTGGCGGGTAAACCCGCTCCAACCACGGGGCCTATTGGCCTTCCGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc > 1:1159999/1‑150 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCCCGAATAAGGTGGTCGATTCACCATCGCATTAGCGGGTAAACCCGCTCCGAACAGGGGCCCGAATGGCCATCCTGCGTGTTTCTGCGGCTCGCGGATCTTGTAc > 1:2310966/1‑150 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTGCAGGCGTGTTTCTGCGGCTCGCGGCTCGTGTACCAg > 2:5277768/1‑150 (MQ=255) aaCCATTGAAGACAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:3768702/150‑1 (MQ=255) agaACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAg < 2:6804490/150‑1 (MQ=255) acGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCCTCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACCGCGCCg > 2:5434378/1‑150 (MQ=255) cGCCTCTTGTTGGCGGGGTTTTACCCGCTAATAGGGTGGTGGATGCACAATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCgg < 1:890037/150‑1 (MQ=255) ctctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGTGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 2:6706239/150‑1 (MQ=255) gTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:1064673/150‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcag < 2:2435608/150‑1 (MQ=255) aGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 1:6097106/150‑1 (MQ=255) aGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGCTCTTGTACCAGGCCACGTACCGCGCCGGCAGGAACagcagc > 2:2636230/1‑150 (MQ=255) gCGGGTTTACCCGCGAAAACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCCGAGGGGCCTTCAGGCGTGGTTCTGCGGCTCGCGGGTCTTGTACCCGGCCACGTCCAGCGCCGGCAGGCACAGCAGCg > 1:3899778/1‑150 (MQ=38) ggTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa < 2:7275917/150‑1 (MQ=255) aCCCGCGAATTGGGGGGTCGCTGCACCTTCGCTTTGGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg < 1:1341114/150‑1 (MQ=255) aCCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg < 2:1826704/150‑1 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:4776911/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1819314/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt < 1:609056/150‑1 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1510834/1‑150 (MQ=255) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg > 1:4148427/1‑102 (MQ=17) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:4148302/102‑1 (MQ=17) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:4148434/102‑1 (MQ=17) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:75136/1‑150 (MQ=37) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:2137069/1‑150 (MQ=37) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:3076854/1‑150 (MQ=25) cgcgAATGCGATGGTGCATCGACCACCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:6776639/1‑150 (MQ=37) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:1221238/150‑1 (MQ=255) gcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:2517929/1‑150 (MQ=37) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:1094163/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:4577552/1‑150 (MQ=255) aaTACGGTGGTCCATCCACAATCCAATTCGCGGTAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 1:2208377/150‑1 (MQ=255) tcGGTGGTCTCTGCACCATCGCATTCGCGTGTAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:3377449/149‑1 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:3197298/150‑1 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:1783753/150‑1 (MQ=255) cGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgat > 2:1673293/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 1:4062881/1‑150 (MQ=255) tggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 1:6649020/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCACCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 1:1010944/1‑150 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc > 2:568423/1‑150 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc > 2:5749731/1‑150 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc > 2:6401791/1‑150 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGc > 2:2879687/1‑150 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGc > 2:2100607/1‑150 (MQ=255) aTGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc < 2:1425691/150‑1 (MQ=255) aTGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGACCAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc > 2:6279505/1‑150 (MQ=255) | GAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAA > NC_002947/5902638‑5902936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |