| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 403,270 | T→A | 5.3% | intergenic (‑70/+99) | msrA ← / ← PP_0337 | peptide methionine sulfoxide reductase MsrA/sensory box protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 403,270 | 0 | T | A | 5.3% | 829.7 / 21.4 | 251 | intergenic (‑70/+99) | msrA/PP_0337 | peptide methionine sulfoxide reductase MsrA/sensory box protein |
| Reads supporting (aligned to +/- strand): ref base T (96/140); new base A (2/12); total (99/152) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.35e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 253 total aligned reads displayed.
GGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAGTTCGCG > NC_002947/403121‑403419 | gCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGAACATGGCCGTTCCTCTGTGTTTATTCCGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTa > 2:27350/1‑150 (MQ=255) gtgtCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACCGGTCCa > 1:2936962/1‑150 (MQ=255) gtgtCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGAACa < 2:3260819/150‑1 (MQ=255) gcgGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGcaca < 2:4502986/150‑1 (MQ=255) gcgGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGcaca < 2:5711883/150‑1 (MQ=255) cgGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAg > 1:6715403/1‑150 (MQ=255) caggcaggGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGttt < 2:3235693/150‑1 (MQ=255) caggcaggGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGttt < 1:3056519/150‑1 (MQ=255) aggcaggGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTc > 1:7288419/1‑150 (MQ=255) aggcaggGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACcacaaccttt < 2:7254555/150‑7 (MQ=39) gcaggGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCaa < 1:3000387/150‑1 (MQ=255) gcaggGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCaa < 1:6745260/150‑1 (MQ=255) aagccaagttctaagcaacaccctgctctgcttcacctgaagcgggaaacgccgaccccatccggcgtttcccgcttctttttgtctgtgtgaaatgcgccggcctcttcgcgggctTGCCCGCTCCCACAGGTACAGCACAGTTCTCaa > 2:3820561‑M1/118‑150 (MQ=255) ggCCTGTTCCGCAGTGGGCTTGACGTTTTTGTTCACCAGGATTTCCGATCGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGt < 1:838318/150‑1 (MQ=255) ggCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGt > 2:7224729/1‑150 (MQ=255) ggCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGt < 2:3336851/150‑1 (MQ=255) cgtGTTCCGCAGTGGGCATGACGTTTTTGTTCTCCAGGATTTCCGAACGCAGGACCATGGCCGGTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCTTGCCCGCTCCCACAGGTACAGCACAGGTTTCATAGGTtg < 2:4674144/148‑1 (MQ=255) ccTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTtg < 1:1035287/150‑1 (MQ=255) cTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTtgt < 2:7149991/150‑1 (MQ=255) cTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTtgt > 1:4446455/1‑150 (MQ=255) tGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTtgtg < 1:4280194/150‑1 (MQ=255) tGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTtgtg < 2:7085498/150‑1 (MQ=255) agggggCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCt < 1:3930726/147‑1 (MQ=255) tGGGCATGTCGTTGTTGTTCACCAGGATTTGCGAACGCTGGAGCATGGCCGTTGCTCTGTGTTTATTCAGTGGTGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACATCTCTGGTTTCTTATGTTGTGGTGTTCCtgt < 2:5775260/150‑1 (MQ=255) tGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCtgt < 1:6500747/150‑1 (MQ=255) tGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCtgt < 1:6035081/150‑1 (MQ=255) gggCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCtgtg < 2:486412/150‑1 (MQ=255) gggCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCtgtg < 1:5577425/150‑1 (MQ=255) acaccctgctctgcttcacctgacgcgggaaacgccgaccccagccggcgtttcccgcttctttttgtctgtgtgaaatgcgccggcctcttcgcgggctTGCCCGCTCCCACAGGTACAGCACAGTTCTCAaggtctgtggtgatactg > 1:1367723‑M1/101‑144 (MQ=255) ggCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTtgtg > 1:4689510/1‑138 (MQ=255) ggCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTgg < 1:7187472/150‑1 (MQ=255) ggCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTgg > 1:4752530/1‑150 (MQ=255) ggCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTgg > 2:1475307/1‑150 (MQ=255) cATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGa < 2:769293/150‑1 (MQ=255) cATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGa < 1:4779764/150‑1 (MQ=21) tGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGc < 2:5106890/150‑1 (MQ=18) aCGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCgg < 2:3574011/150‑1 (MQ=255) aCGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCgg < 2:1410082/150‑1 (MQ=255) aCGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCgg < 2:3329152/150‑1 (MQ=255) gTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCgg < 1:2894739/150‑1 (MQ=17) ttttGTTCACCAGGATTTCCGACCGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGt < 1:1940790/150‑1 (MQ=255) ttttGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGt < 1:4865301/150‑1 (MQ=255) ttttGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGt < 2:1145649/150‑1 (MQ=255) ttttGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGGTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCCCAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGt < 2:4140532/150‑1 (MQ=255) ttGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGGTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGc < 2:5946638/150‑1 (MQ=18) ttGATCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTGGTGGTGTTCCTGTGGGAGCGGGCGTGc > 2:3207410/1‑150 (MQ=255) cttcacctgaagcgggaaacgccgaccccatccgccgtttcccgcttctatttgtctgtgtgaaatgcgccggccccttcgcgggctTGCCCGCTCCCACAGGTACAGCACACTTCTCAAGGTCTGTGGTGATACTGTGGGAGCGggcaa > 2:5564302‑M1/88‑148 (MQ=255) tGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGcc < 2:4903580/150‑1 (MQ=255) gTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGccc > 2:5238100/1‑150 (MQ=255) ccAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGcaca > 1:5064103/1‑103 (MQ=255) cAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTc > 2:1530814/1‑124 (MQ=255) cAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTc < 1:1530814/124‑1 (MQ=255) ccGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGa > 2:4757397/1‑150 (MQ=255) gAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCCCAGGTACAGCCCAGGGTTCGAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGact > 1:3446591/1‑148 (MQ=255) aaCGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGTTCGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGTTTGTGGTTTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATg < 2:873366/150‑1 (MQ=255) gCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCt > 1:4819714/1‑150 (MQ=255) gCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCGGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCt > 2:3884950/1‑150 (MQ=255) gACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCta > 2:937938/1‑150 (MQ=255) gACCATGACCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCta > 2:1669952/1‑150 (MQ=255) ccATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACACGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCCAATGGCTTCtata > 1:5639012/1‑150 (MQ=255) aTGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGt < 2:6715403/150‑1 (MQ=255) ccTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGa < 2:4331223/150‑1 (MQ=255) ctctGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACCGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGAt < 2:1605540/150‑1 (MQ=255) tctGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGAtt > 2:375948/1‑150 (MQ=255) tctGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGGATCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGCAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGAtt > 2:4029103/1‑150 (MQ=255) tgtgTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTAc > 2:1303143/1‑150 (MQ=255) gtgtTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTGGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACg < 2:228188/150‑1 (MQ=255) gtgtTTATACAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATCCCCGCTCCCACAGGAACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGAGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACg > 2:67671/1‑150 (MQ=255) tttttttCTGTGGGGTTGGGGTTGGGGCG‑‑TTCGGGGGCAGGCCCGCTCCCACTGGTACAGCACTGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGGGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCa < 1:7224729/149‑1 (MQ=255) gtTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCtgtg < 2:2519424/91‑1 (MQ=255) gtTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCtgtg > 1:2519424/1‑91 (MQ=255) tttATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATTCCCCCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTACTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCCAATGGCTTCTATAGTGCCCGAGGATTACGCAg > 1:2612799/1‑150 (MQ=255) gctggggggTCGGGGTTTGGGCC‑‑TTCGGGGGCTTGCCCGCGCCCACAGGTACCGCCCCGGTTTCCCTGGTTGGGGTGTTCCTGTGGGCGGGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTc < 1:3186380/145‑1 (MQ=255) aGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACCCCACAGGTTTCAAAGGTTTTGGTGTTCCTGTGGGAGCGGGCGTGCCCCCGAAAGGGCCCGAATTGCTTCTATAGTGCCCGGGGAATACGCACCTGTCAg > 1:2100539/1‑150 (MQ=38) aGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAg < 2:6380961/150‑1 (MQ=255) gTAGTGGTTTGTGCC‑‑TTCGCGGGCATGCCAGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGAGACCGAGGATTACGCAGCTGTCAGGCCAcc > 2:6146853/1‑150 (MQ=38) gggTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGc > 2:3206355/1‑150 (MQ=255) tGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCAcgc < 2:2896971/150‑1 (MQ=255) c‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAATGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGAtc > 2:3963756/1‑149 (MQ=255) c‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCGGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATa < 2:2990138/150‑1 (MQ=255) ggagcgGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAg > 2:4989582/4‑150 (MQ=255) tCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAgc < 2:5598519/150‑1 (MQ=255) aTGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATg < 2:6929672/85‑1 (MQ=255) GCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCg < 1:5231699‑M1/150‑1 (MQ=255) CCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGt < 1:705968‑M1/60‑1 (MQ=255) CCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCt < 1:6786053‑M1/150‑1 (MQ=255) CCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCt < 1:6883187‑M1/150‑1 (MQ=255) CTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCgg < 2:6982865‑M1/150‑1 (MQ=255) CCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCa < 1:6328334‑M1/150‑1 (MQ=255) CCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCa < 1:625023‑M1/150‑1 (MQ=255) CCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCa < 2:6591414‑M1/150‑1 (MQ=255) CACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAg < 1:1853340‑M1/150‑1 (MQ=255) cCAGGTACAGCACTGGTTTCAATGGTTGTGGGGTTCCTGTGGGCGGGTGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGGGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAGt > 1:7255620‑M1/2‑150 (MQ=255) acgggTACAGCACAGGTTTCAAAGGTTGTGGTCTTCCGGTGGGAGCGGGCGTGCCCGCGCAAGGGCCCGAATGGGGTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAGt > 2:5711201/4‑150 (MQ=255) ACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGc > 1:1273775‑M1/1‑110 (MQ=255) ACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGc < 2:1273775‑M1/110‑1 (MQ=255) ACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAGt < 2:4275740‑M1/150‑1 (MQ=255) ACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAGt < 2:3054435‑M1/150‑1 (MQ=255) gTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGc > 1:2059078/1‑62 (MQ=255) gTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAGTTcgc > 1:3634867/1‑150 (MQ=255) | GGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTTTCAAAGGTTGTGGTGTTCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCCGAATGGCTTCTATAGTGCCCGAGGATTACGCAGCTGTCAGGCCACCGGGCCACGCGGATAGCGCTTCAGCCGCTCGGCCAGTTCGCG > NC_002947/403121‑403419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |