| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 90,358 | A→G | 7.6% | intergenic (+33/+89) | PP_0079 → / ← PP_0080 | transcriptional regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 90,358 | 0 | A | G | 7.6% | 896.2 / 41.8 | 291 | intergenic (+33/+89) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (116/150); new base G (4/18); total (120/171) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.36e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.66e-01 | |||||||||||
Only 100 of 297 total aligned reads displayed.
CTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCC > NC_002947/90209‑90508 | tGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACAC > 1:837245‑M1/1‑150 (MQ=255) tGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACAC > 2:7163103‑M1/1‑150 (MQ=255) gAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAA > 1:3432652‑M1/1‑150 (MQ=255) ggggAGTTTGCGCTCGGAACGCGGCTTTTACGTAGTCTTACCGCCGCGCACGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGG < 1:957775‑M1/150‑1 (MQ=255) ggggAGTTTGCGCTCGGAACGCGGCTATTACGTCGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGG < 2:1277382‑M1/150‑1 (MQ=255) ggggAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGG < 1:6571651‑M1/150‑1 (MQ=255) ggggAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGG < 2:4860170‑M1/150‑1 (MQ=255) gAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCG > 1:2193510‑M1/1‑150 (MQ=255) tttGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTGGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTC > 2:5277292‑M1/1‑150 (MQ=255) ttGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCC < 1:6004367‑M1/150‑1 (MQ=255) tGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCC > 2:3494766‑M1/1‑150 (MQ=255) gcTCGGAACGCGGATATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGCCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA < 1:778623‑M1/150‑1 (MQ=255) tCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGt < 1:4954086/150‑1 (MQ=255) cGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAtgg < 2:1526256‑M1/150‑4 (MQ=255) gAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAcgggc > 1:1857622‑M1/1‑145 (MQ=255) cgcgGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACt < 1:4862979/150‑1 (MQ=255) cgcgGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTGGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACt < 2:2727785/150‑1 (MQ=255) gcgGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTg < 2:4601239/150‑1 (MQ=255) cgGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGc < 2:3635577/150‑1 (MQ=255) cgGATATTACGTCGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGc < 1:1344342/150‑1 (MQ=255) ggCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACAtgggccggcgt > 2:5048629‑M1/1‑139 (MQ=255) tATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCacac < 2:4012184/150‑1 (MQ=255) gagTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACAtgggccggcgtgtgcagtgcc < 1:6994742‑M1/149‑22 (MQ=255) tCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAt < 1:4354813‑M2/150‑2 (MQ=255) cgccggGCAAGCGGCGTGGGGCGTTGATCGAGCTTTTTTTTGTTTGGTTGGAGCAGTAGCGCAGCGTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtggga < 1:697856‑M1/150‑31 (MQ=255) cgccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtggga < 1:7377364‑M1/150‑31 (MQ=255) cgccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtggga < 2:2161241‑M1/150‑31 (MQ=255) cgccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtggga < 1:2779038‑M1/150‑31 (MQ=255) cgccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAtgtggga > 2:5118672‑M2/1‑143 (MQ=255) cgccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAtgtggga > 2:2034336‑M2/1‑143 (MQ=255) gccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtgggag < 2:1354632‑M1/150‑32 (MQ=255) ccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAtgtgggagc > 1:504589‑M2/1‑141 (MQ=255) cgcgCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAtgtgggagcg > 2:6663563‑M2/1‑140 (MQ=255) gcgcAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGGGCACTGCACACGCCG‑GCCCAtgtgggagcgg < 1:1070837‑M2/150‑12 (MQ=255) gcggcgTGGGGCGTTGATCGTGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGc < 1:1522340/150‑1 (MQ=255) gcggcgTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGc < 2:2376788/150‑1 (MQ=255) gcggcgTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTGGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGc < 2:2276268/150‑1 (MQ=255) cggcgTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCg < 1:2404284/150‑1 (MQ=255) ggcgTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCCCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGt < 2:6018016/150‑1 (MQ=255) gcgTGGGGCGTTGATCGAGCGGTTGGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGCTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGGGGGAGCGGCCTTGCGTc < 2:7285539/150‑1 (MQ=255) cgTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTcg < 2:5430859/150‑1 (MQ=255) tGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTcgcg > 2:1926170/1‑150 (MQ=255) ggggCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGa > 2:4246342/1‑150 (MQ=255) gCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAtgt < 1:6461450‑M2/126‑4 (MQ=255) gTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGc > 2:5009948/1‑150 (MQ=255) cGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca < 2:864592/150‑1 (MQ=255) ggTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCagcagc < 2:3173927/150‑1 (MQ=255) gTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcc > 2:5591326/1‑150 (MQ=255) tttGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGccc < 1:718285/150‑1 (MQ=255) ttGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACACGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccc < 1:3991194/150‑1 (MQ=255) ttgGATTGGTTGTAGCAGGAGCGCAGCCTTTGACATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCgg < 1:6369793/149‑1 (MQ=255) tgGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGc > 2:7354390/1‑150 (MQ=255) aTTGGTTGGACCAGGAGCGCAGCATTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTCCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAAt < 1:672086/150‑1 (MQ=255) ttggttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑Gccc < 1:2686249/99‑1 (MQ=255) ttggttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑Gccc > 2:2686249/1‑99 (MQ=255) ttgggtggAGCAGGAGCGCAGCCTTTGAGATTTGGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATc < 1:5378652/150‑1 (MQ=255) ggttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa < 2:1251127/150‑1 (MQ=255) ggttggAGCAGGAGCGCAGCCTTTGAGATTTGGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa < 1:5115381/150‑1 (MQ=255) gttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATAGCGACACAAGGCCGCTCCCACAGTTGCACTGCAAAAGCCG‑GCCCAAGTGGGAGCGGCCAAGCGTCGCGGTGGGCTGCGCAGCAGCCCCGGCAATCTAg > 1:1089931/1‑150 (MQ=38) ttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATcagat > 2:7372176/1‑146 (MQ=255) tggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAc < 1:4374593/150‑1 (MQ=255) ggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAcc > 2:1165568/1‑150 (MQ=255) aGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGaa > 2:6832566/1‑150 (MQ=255) ggAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACGGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAg < 1:3090857/150‑1 (MQ=255) gcAGCCTTTGAGTTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAg < 2:615224/150‑1 (MQ=255) gcAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACTCAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAg < 2:6273945/150‑1 (MQ=255) cAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATAGCGACACAAGGCCGCTCCCACAGTGGCAATGCACACCCCG‑GCCCAAGTGGGAGCGGCCTTGCGTCGCGATGGGCGGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAgg > 2:4545188/1‑150 (MQ=38) aGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGt < 1:1165568/150‑1 (MQ=255) aGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGt > 2:2281042/1‑150 (MQ=255) aGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAGGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGt > 2:4918966/1‑150 (MQ=255) tttGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCAAGACCACGAAGTTCAGGTgctc > 2:2906946/1‑150 (MQ=255) agaTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTgctcgctc < 2:3852974/150‑1 (MQ=255) agaTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTgctcgctc < 2:3251015/150‑1 (MQ=255) aTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccc < 1:3587130/114‑1 (MQ=255) aTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCg < 1:7313667/150‑1 (MQ=255) aTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAGGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccc > 2:3587130/1‑114 (MQ=255) ttttGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCgg < 1:1865690/150‑1 (MQ=255) tttGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTcctgc < 2:5894401/150‑4 (MQ=255) cgatgggCCGCAAAGCGGCCCATCGCGACAAAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGGGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAAACTAGACCACGAAGTTCAGGTGCTCGCTCCGGt > 1:5074415/5‑150 (MQ=38) ttGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTg < 2:3334995/150‑1 (MQ=255) gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGt > 2:3079510/1‑150 (MQ=255) ccGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtc < 1:6791898/150‑1 (MQ=255) cGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtcc < 1:3894936/150‑1 (MQ=255) cGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtcc < 2:837245/150‑1 (MQ=255) gCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAc > 1:6178810/1‑115 (MQ=255) cTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAtgtgggagcggccttgcgtcgcgatgggctgcgcagcagccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctc < 1:540983‑M2/150‑92 (MQ=255) cTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccag < 2:2434531/150‑1 (MQ=255) tttGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagc < 2:172873/150‑1 (MQ=255) tttGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCAGGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagc > 2:5630596/1‑150 (MQ=255) gCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctccagc < 2:5939228/150‑1 (MQ=255) gCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctccagc < 2:1108058/150‑1 (MQ=255) ccATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCAt > 2:6436581/1‑150 (MQ=255) ccATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCAt > 1:162072/1‑150 (MQ=255) ccATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCAt < 2:3432652/150‑1 (MQ=255) cATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATg > 1:5631576/1‑150 (MQ=255) aTCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGt < 1:5216043/150‑1 (MQ=255) tCGCGACACAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgt < 1:2756107‑M1/50‑27 (MQ=255) tCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTc < 1:5954355/150‑1 (MQ=255) gcgACGCAAGGCCGCTCCCACA‑TGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTcca > 1:4681692/1‑150 (MQ=17) acaAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATc < 1:5573776/150‑1 (MQ=255) | CTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCG‑GCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCC > NC_002947/90209‑90508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |