| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 867,950 | A→C | 9.9% | intergenic (+45/+132) | PP_0750 → / ← mqo‑I | hypothetical protein/malate:quinone oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 867,950 | 0 | A | C | 9.9% | 878.7 / 12.9 | 329 | intergenic (+45/+132) | PP_0750/mqo‑I | hypothetical protein/malate:quinone oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (140/145); new base C (12/30); total (152/177) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.32e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 350 total aligned reads displayed.
GACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTG > NC_002947/867801‑868097 | gacctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACA < 1:3014390‑M1/150‑1 (MQ=255) acctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAG < 1:1678795‑M1/150‑1 (MQ=255) acctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAG < 2:3886599‑M1/150‑1 (MQ=255) ctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGa < 1:1525041/150‑1 (MQ=255) ctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGa < 1:6723279/150‑1 (MQ=255) ggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGt > 1:1133978/1‑150 (MQ=255) cctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgtgttttgtgcctggcgcttgttcagccagtaccccccgcgtcgcgggcctGAccccgcccacacggtcgg < 1:6359706‑M1/20‑8 (MQ=255) cAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCACCGGAGTCGcgcc > 2:2965446/1‑150 (MQ=255) aaGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGcgccg > 2:589131/1‑150 (MQ=255) aGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGc < 2:1133978/150‑1 (MQ=255) aCGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGGGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCCCCGGGGGCGCGCCGCACCGGCggg > 2:4485120/1‑150 (MQ=255) aGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTAc < 1:1813840/150‑1 (MQ=255) cTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgact > 2:407414‑M1/1‑120 (MQ=255) ttCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAc > 2:6359190‑M2/1‑149 (MQ=255) ttCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAc > 1:1041085‑M2/1‑149 (MQ=255) tcgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGTGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgt < 1:4438428‑M1/150‑36 (MQ=255) tcgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgt < 2:5033303‑M1/150‑36 (MQ=255) tcgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑CTTACCGAAccggg < 2:5265057‑M2/150‑6 (MQ=255) tcgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgt > 1:698869‑M2/1‑145 (MQ=255) cgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtg < 2:1082373‑M1/150‑37 (MQ=255) cgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtg < 2:2549044‑M1/150‑37 (MQ=255) gAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtgg < 1:4118375‑M1/150‑38 (MQ=255) gAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgg > 2:5050260‑M2/1‑143 (MQ=255) agcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTgg > 1:2643653‑M1/99‑150 (MQ=255) gCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtggga < 1:5958451‑M1/150‑40 (MQ=255) gCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtggga > 1:6482717‑M2/1‑141 (MQ=255) gCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCACACGAGTCGCGCCGCCCCTGCGGGC‑CTTACCGAAccggggggc < 2:5750160‑M2/150‑10 (MQ=255) cactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcgcGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGa > 2:6396170‑M1/97‑150 (MQ=255) actacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTTGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAg > 2:554840‑M1/96‑150 (MQ=255) ctacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcgcGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑c > 2:2283397‑M1/95‑150 (MQ=255) ctacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcgcGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑c > 2:6033927‑M1/95‑150 (MQ=255) aGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtgggagc < 1:4813698‑M1/150‑42 (MQ=255) aGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtgggagc < 1:407414‑M1/150‑42 (MQ=255) acgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑Cgg > 1:2868843‑M1/93‑150 (MQ=255) tGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggc > 1:5808213‑M2/1‑135 (MQ=255) cGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCCCACCTGCGGGC‑CTTACCGAACCGGTGGGAG‑CGGGCATg > 2:4882354/1‑150 (MQ=255) gACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGc < 2:1712252/150‑1 (MQ=255) gACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTATTCGCGGGCGCGCCCCCACCCACAGGGGTCGCGCCCCACCAGCGGGC‑CTTAACCAAACGGGGGGAG‑CGGGCAttc > 2:1392615/1‑148 (MQ=255) aCCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggag > 2:683168‑M2/1‑130 (MQ=255) gcAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGaa < 1:5685855/150‑1 (MQ=255) tgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagccagtgccggcctcttcgcgggcgcGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAaga > 2:7325704‑M1/78‑150 (MQ=255) aaTGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCcgctccca < 2:7250947/150‑6 (MQ=255) aGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTGCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACa < 2:3332057/150‑1 (MQ=255) gTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCATCGCGGGCCCGCCCCCGCCCCCAGGACTCCCGCCCCCCCGGCGGGC‑AGAAACGAACCGGGGGGCG‑CGGGCAGGCCCCCCCACAGGGCCGTACac > 2:4371252/1‑149 (MQ=255) cctCGAGATCATCGATAAAGCCCGGGGCTGATCTGTCGCCCGTGCGGGCCTGTTCGCGGGCGCGCCCGCTCCCCCCGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGTAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCt < 1:5248152/148‑1 (MQ=255) aTCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCGGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTg > 2:2448896/1‑150 (MQ=255) aTCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtggga < 1:5559164‑M1/116‑40 (MQ=255) tCGAGATCATCTATAACGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTCCGGGGGCGCGCCCGCCCCCACCGGAGTCGCGCCGCACCGGCGGGC‑ATTACCGACCCTGTGGGAG‑GGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGa < 1:1939280/150‑1 (MQ=255) tCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑CTTACCGAACCGGGGGGAG‑CGGGCAAGCCCGCGAAGAGGGCGGTACAGGCCGa > 2:4823958/1‑150 (MQ=39) tcatcGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCCCCGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAgc < 2:613940/150‑1 (MQ=255) tcatcGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGCCCACAGGAGTCGCGCCCCCCCAGCGGGC‑AGTACCCGACCGGGGGGGG‑CGGGCCAGCCCGCCGAGAGGGCGGTACAGGCAGATAAAgc > 2:2767444/1‑150 (MQ=255) gATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCCCACGAGTAGCGCCGCACCAGCCGGC‑AATACCCAACCGGTGGGGGCCGGGCA‑GCCCCCGAAGAGGGGGGTACACGCTGTTCAACCGCCAg > 2:717667/1‑150 (MQ=255) gATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCGGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAg > 2:6798422/1‑150 (MQ=255) gATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGCCCACCGGAGGCGCCCCCCACCAGCGGGCAATTACC‑AACCAGGGGGAG‑CGGGCCTGCCCGCGAAGAGGGCGGTACACGCTGATAAAGCGCCAg > 2:3800081/1‑150 (MQ=255) gATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCACTTCGCGGGCGCGGCCCCTCCCCCACGCGTGGCGGCCCACCGGCGGGC‑CTTTCCCGACCGGGGGGCG‑CGGGGCTGCCCGCGGCGAGGGCGGTTGAGGCTGTTAAAGCGcccc > 2:321873/1‑148 (MQ=255) aaaGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGca < 2:7274042/150‑1 (MQ=255) ccGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGttcggtaatgcccgcaggtgcggcgcgactcctgt < 2:203589‑M1/92‑36 (MQ=255) tggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTgg > 2:3587656‑M1/40‑91 (MQ=255) tggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTgg < 1:3587656‑M1/52‑1 (MQ=255) tAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCACCCCCACGAGTCGCGCCCCACCGGCCGGC‑CATACCGAAACAGTGGGTG‑CGGGCAATCCCCCGACGTGGGCGGTACAGGCGGAACAAGCCCCACGCACAAAAAAAACCCCCAgggg > 2:3406895/1‑150 (MQ=255) aGCCTGTGCGGGCCTCTTCGCGGGCGGGCCCGCCCCCACAGGAGTCGCGCCGCACCTGCGGGC‑TTTACCGACCCTTTGGGAG‑GGGGCATGCCCGCGAAGTGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGc < 1:6773443/150‑1 (MQ=255) gTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCGtttt < 1:7350498/150‑1 (MQ=255) ggCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGAACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCGttttt < 1:604120/149‑1 (MQ=255) gCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCGtttttt < 2:1026133/150‑2 (MQ=255) cccGCCCACTTCCCGGGCGCGCCCGCTCCCACCGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCGtttttt < 1:4882354/149‑2 (MQ=255) ggCCTCTTCGCGGGCGCGCCCGCTCCCACCGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGACCCGGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGt < 2:6541538/150‑1 (MQ=255) ggCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGt < 2:3668090/150‑1 (MQ=255) cccctgcgcgGGCGCCCCCGCGCCCCCCGGAGCCGCGCCGCACCGGCGGGC‑AGTACCGACCCGGGGGGCG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGttt < 1:3259065/144‑1 (MQ=255) ctctTCGCGGGCGCGCCCGCGCCCACCGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTc < 2:7025557/150‑1 (MQ=255) ttCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCAGCGGGC‑ATTACCGAAACGGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCCAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGa > 2:4002054/1‑150 (MQ=255) ggggCGCCCCCGCTCCCACCGGCGGCCCGCCGCCCCTGCGGGA‑ATTCCCGACCGTGGGGGCG‑CGGGCAGGCCCGCGACGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCgg < 1:3152794/149‑1 (MQ=255) cgGGCGCGCCCCCTCCCACAGGAGTCGCGCCCCACCATCGGGC‑CATACCGCACCCGTGGGAG‑CGGGCATGCCCCCGCAGAGGGCGGTACAGGCAGATCAAGCGCCAGGCACAAAAAAACCCCCCCGGGGCGGTTTTGCGGTTCAGAACgg > 2:1591530/1‑150 (MQ=255) ggCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCt < 2:2091825/150‑1 (MQ=255) GCCGGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGc > 1:5979477‑M1/1‑150 (MQ=255) GCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGc > 2:4606618‑M1/1‑150 (MQ=255) GCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGc < 2:6639832‑M1/150‑1 (MQ=255) CGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGACCCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTa > 1:7448372‑M1/1‑150 (MQ=255) CGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGGGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTa > 2:6370761‑M1/1‑150 (MQ=255) cTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggcatgcccgcgaagagggcggtacaggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctg < 1:4014626‑M2/150‑111 (MQ=255) tCCCACAGGttcggtaatgcccgcaggtgcggcgcgactccggtgggagcgggcgcgcccgcgaaggggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgc > 2:4321842‑M1/1‑9 (MQ=255) tCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggcatgcccgcgaagagggcggtacaggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgc < 1:5392895‑M2/150‑112 (MQ=255) tCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggcatgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgat > 2:5559164‑M2/1‑39 (MQ=255) TCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTg < 1:6915842‑M1/150‑1 (MQ=255) TCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTg < 1:6346678‑M1/150‑1 (MQ=255) ccACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgctc > 2:180322‑M1/1‑7 (MQ=255) ccACAGGttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgctc > 1:5361851‑M1/1‑7 (MQ=255) CCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCt < 2:1826316‑M1/150‑1 (MQ=255) CCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCt < 2:47271‑M1/150‑1 (MQ=255) cacaGGttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgctcg > 1:6566073‑M1/1‑6 (MQ=255) cacaGGttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgctcg > 1:1306210‑M1/1‑6 (MQ=255) cacaGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggcatgcccgcgaagagggcggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgctcg < 1:959776‑M2/150‑115 (MQ=255) CACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAATCGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCtt < 2:3241507‑M1/150‑1 (MQ=255) acaGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacatatcagccacgggctttatcgattatatcgatgtactcaggggcattgcgctggtcggcaatatgctcga < 1:3406238‑M2/150‑116 (MQ=255) acaGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggggcattgcgctggtcggcaatctgctcga < 2:5033309‑M2/150‑116 (MQ=255) acaGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAAcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgg > 1:203589‑M2/1‑35 (MQ=255) ACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAATCGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg < 1:508560‑M1/150‑1 (MQ=255) ACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAATCGTAGTGCTTg < 1:2328789‑M1/150‑1 (MQ=255) ACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg > 2:6509946‑M1/1‑150 (MQ=255) ACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg < 2:3485258‑M1/150‑1 (MQ=255) CAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCGTGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGttt > 2:7395279‑M1/1‑116 (MQ=255) | GACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGC‑ATTACCGAACCTGTGGGAG‑CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTG > NC_002947/867801‑868097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |