| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,644,587 | C→T | 8.4% | intergenic (‑186/‑125) | czcR‑III ← / → PP_1439 | response regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,644,587 | 0 | C | T | 8.4% | 611.7 / 32.8 | 202 | intergenic (‑186/‑125) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (106/79); new base T (8/9); total (114/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 | |||||||||||
Only 100 of 218 total aligned reads displayed.
CCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGT > NC_002947/1644439‑1644736 | ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑Accc < 2:5117678/150‑1 (MQ=255) tGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCcgc > 1:1187762/1‑150 (MQ=255) tGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCcgc > 1:6194114/1‑150 (MQ=255) tAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGa > 2:5919191/1‑150 (MQ=255) aGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGaa < 1:270267/150‑1 (MQ=255) aGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCGGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGaa < 1:3991996/150‑1 (MQ=37) gTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAag > 1:5243561/1‑150 (MQ=255) tGACATCCGGGCCACGCGCCCCACTGTAACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTAACTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAaga < 1:6883658/150‑1 (MQ=255) tGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAaga > 1:1292457/1‑150 (MQ=255) tGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAaga < 1:6720718/150‑1 (MQ=255) gACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTGGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAagag < 2:7276131/150‑1 (MQ=255) cATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGc < 2:1754878/150‑1 (MQ=255) tCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGccc < 1:611711/150‑1 (MQ=255) tCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTACAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGccc > 2:1548511/1‑150 (MQ=255) ggTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAAc > 2:7076818/1‑150 (MQ=255) gTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACa > 2:2130312/1‑150 (MQ=255) aaGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATCCGGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTc < 2:5427704/150‑1 (MQ=255) aGCGCCCCAATGTTACGGCATGAAAAAAGGCCGGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAgaca < 1:1022547/150‑4 (MQ=255) gcCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCcaca > 2:6238074/1‑150 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCcacaca > 1:2179583/1‑150 (MQ=255) aaTGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAgg > 1:3019975/1‑150 (MQ=255) aCGGCATGAAAAATGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTTATCGCGCGGCTGTTGGAAGGGGTTT‑ACCCGGGTAGTGGCGCGAACAGTCCTCACAAGGCCAGAt > 2:5581706/1‑150 (MQ=255) aCGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAt > 2:4154274/1‑150 (MQ=255) cGGCATGAAAAAAGGCCGGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAtt < 2:6027170/150‑1 (MQ=255) ggCATGAAAAAAGGCCTGCGGTGCAGATAAGGGATTTGTATTTGGGCTGTTTTCTGGGTGTCTGTTCGGGCCTCTGCGCGATTAAACCCGCGCCGGTCGTACGGGTTTT‑ACCGGCTAAGCGGCCCGAACAGTCCACACAAGGCCACATTg < 1:4766396/150‑1 (MQ=255) ggCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACCTTg > 2:3989756/1‑150 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCa < 2:2414965/150‑1 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCa < 2:5877759/150‑1 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑AACCGCGAAGAGGCCCGAACACTCCAAACAAGGCCACATTGCa > 1:1308695/1‑150 (MQ=255) aaaaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAACCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGTAGAGGCCCGAGCAGTCCACACCAGGCCACATTGCCggcc > 2:4649947/1‑148 (MQ=255) aaaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGaa > 2:670478/1‑111 (MQ=18) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTg > 1:2419935/1‑150 (MQ=255) tGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATcccc > 2:2604468/1‑150 (MQ=255) cGGTGCTGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTTTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGc < 1:4340063/150‑1 (MQ=255) gcataaaaCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTCGCACGGGGTTT‑ACCCGCTAAGTGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCa < 1:1082861/144‑1 (MQ=255) gCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCa > 2:4693631/1‑150 (MQ=255) gATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCt > 2:412788/1‑150 (MQ=255) gATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAGTGCAGGACTGTAATCCCCGCCTCACCt > 2:337413/1‑150 (MQ=255) tAACGTATTTTTATTTGTGGTTTTTTGGGGGTGTCTGTGGGGGCCTATTCGCTATAAAACCCGCGCGTTTA‑GCACGGGTTTAACCCGCTATGAGCCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTg < 1:6425980/150‑1 (MQ=255) aCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCTCGCCTTTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGcc < 2:6803803/150‑1 (MQ=255) cGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTAGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCg > 1:7203753/1‑150 (MQ=255) cGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGCTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCg < 2:6366961/150‑1 (MQ=255) ggATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGt > 1:5378835/1‑150 (MQ=255) aTTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTa < 1:2419059/150‑1 (MQ=255) ctgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAACCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTc < 1:4264363/150‑1 (MQ=255) tgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAATGCAGGACGGTAATCCCCGCCTCACCGTGCCGTTAGCCAGCCCTCg > 1:500435/1‑150 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 2:7321292/150‑1 (MQ=255) tATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGa > 2:5757319/1‑150 (MQ=255) cTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGTTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATgg < 1:2346257/150‑1 (MQ=255) ggCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACCCAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGcc > 2:6948711/1‑150 (MQ=255) gtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtgt > 1:7361763/1‑150 (MQ=255) tctgtTCGGGCCTCTTCGCTAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTc < 2:2571529/150‑1 (MQ=255) tgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTg > 2:7406856/1‑150 (MQ=255) ttCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGAt < 2:2792833/150‑1 (MQ=255) gCCTCTTCGCGCGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtt < 1:3662255/150‑1 (MQ=255) cccctTCGCGAGTAAACCCGCGCCTGTAGTAACGGTTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta < 1:2213541/147‑1 (MQ=255) ctctTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttat > 1:5767492/1‑150 (MQ=25) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 1:6212494/1‑150 (MQ=255) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 2:1866092/1‑150 (MQ=255) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 1:4417206/1‑150 (MQ=255) ctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatta > 2:2874233/1‑150 (MQ=255) cgcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 2:821258/150‑1 (MQ=255) gcgAGTAAACCCGCGCCTGTAGTAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg < 1:2932641/150‑1 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 2:4211296/1‑150 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg < 2:5243561/150‑1 (MQ=255) cgggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAgg > 1:1767036/4‑150 (MQ=37) ggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCa > 2:3470432/2‑150 (MQ=37) aGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCa > 2:1246709/1‑150 (MQ=255) gTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGcc < 2:4715673/98‑1 (MQ=18) gTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCaa > 1:4018216/1‑150 (MQ=255) tAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCGCCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCaaa < 2:6823207/150‑1 (MQ=255) aCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTAACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 2:3516763/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg < 2:3065942/150‑1 (MQ=255) ccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 1:765828/1‑150 (MQ=255) ccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 2:1334312/1‑150 (MQ=255) ccTGTAGGAAGGGTTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc < 1:1517037/150‑1 (MQ=255) ctacaGGCACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAcc > 2:5344992/5‑150 (MQ=255) tGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa > 1:7291688/1‑132 (MQ=255) tAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGa > 2:3761294/1‑150 (MQ=255) tAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGa > 1:457399/1‑150 (MQ=255) ggAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGAcc > 1:4747235/1‑150 (MQ=255) aaCGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCaa > 1:7010448/1‑150 (MQ=255) gcGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCaaa > 2:1781396/2‑150 (MQ=255) aCGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCaaa > 1:4547592/1‑150 (MQ=255) aCGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCaaa > 2:6110946/1‑150 (MQ=255) gggTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATa > 2:3598472/1‑150 (MQ=255) ggTTT‑ACCCTAGTAGAGGCCCGAACAGTCCACACTAGGCCACATTTCAGGACTTTAATCCCCGCCTCAGCTTGCCGTTATGCAGCCCTCGCTAGGATGGCCGTGTGTGATCGGTTATTACGAGGCAAACACTATGAACCTGACCtactac < 2:1703592/150‑1 (MQ=255) ggTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttat > 1:337754/1‑117 (MQ=255) gTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 2:5361087/92‑1 (MQ=255) ttt‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACct > 1:2079385/1‑150 (MQ=255) t‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACctgc > 1:2999249/1‑150 (MQ=255) aCCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACctgct > 2:437616/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCACACACGATGAACCTGACCAAATACCTGCTGt > 2:1287652/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACctg > 2:488327/1‑146 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt > 1:5690533/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt > 2:4023506/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt > 2:2896607/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt > 1:2543043/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt > 1:1694976/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt > 2:4772419/1‑150 (MQ=255) | CCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGT > NC_002947/1644439‑1644736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |