BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,730,398	T→G	9.1%	Q65P (CAG→CCG)	PP_1519 ←	lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,730,398	0	T	G	9.1%	930.4 / 6.1	356	Q65P (CAG→CCG)	PP_1519	lipoprotein
Reads supporting (aligned to +/- strand): ref base T (141/164); new base G (42/2); total (190/166)
Fisher's exact test for biased strand distribution p-value = 4.70e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 359 total aligned reads displayed.

GACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTGGAGCAG  >  NC_002947/1730250‑1730547

gACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTg                                                                                                                                                      <  1:3016254/150‑1 (MQ=255)

gACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTg                                                                                                                                                      <  2:5055780/150‑1 (MQ=255)

 acacCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTgg                                                                                                                                                     <  1:1003333/150‑1 (MQ=255)

  cacCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGgc                                                                                                                                                    <  2:3516992/150‑1 (MQ=255)

   acCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGgcg                                                                                                                                                   >  2:7313316/1‑150 (MQ=255)

   acCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGgcg                                                                                                                                                   >  2:7115147/1‑150 (MQ=255)

   acCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGgcg                                                                                                                                                   >  2:3376878/1‑150 (MQ=255)

    ccGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGgcgc                                                                                                                                                  <  2:6944552/150‑1 (MQ=255)

    ccGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGgcgc                                                                                                                                                  <  2:1992908/150‑1 (MQ=255)

     cGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGgcgcg                                                                                                                                                 >  1:2279913/1‑150 (MQ=255)

       tggtgTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGcc                                                                                                                                               >  2:1598085/1‑150 (MQ=255)

        ggtgTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCa                                                                                                                                              >  1:5410636/1‑150 (MQ=255)

         gtgtTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAg                                                                                                                                             <  1:7352882/150‑1 (MQ=255)

          tgtTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGGCGGGCGCGCCAgg                                                                                                                                            >  1:3757661/1‑150 (MQ=255)

          gggtCGGTATTGATGAACAGCAACGTGCCCTTCAGCTCAATGCGCGCACTGACCGCATAGCGGGGGCCAGGCTTGACCTGCGCGGGGTCAGAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAgg                                                                                                                                            <  2:5617030/147‑1 (MQ=255)

            ttCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGt                                                                                                                                          >  2:6764257/1‑150 (MQ=255)

            ttCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGt                                                                                                                                          >  1:5417901/1‑150 (MQ=255)

              cGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGGCGGGGGCGCCAGGGtga                                                                                                                                        >  1:1549097/1‑148 (MQ=255)

              cGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCa                                                                                                                                        >  2:6802200/1‑150 (MQ=255)

              cGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCa                                                                                                                                        >  2:401414/1‑150 (MQ=255)

               ggTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGGCAc                                                                                                                                       >  2:2712864/1‑150 (MQ=255)

                 tATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGGCTGGGGGGCCAGGGTGACgg                                                                                                                                     >  1:2024642/1‑150 (MQ=255)

                   ttGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCa                                                                                                                                   >  1:1310631/1‑150 (MQ=255)

                     gatgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAgg                                                                                                                                 <  1:4017840/150‑1 (MQ=255)

                     gatgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAgg                                                                                                                                 <  1:3704257/150‑1 (MQ=255)

                     gatgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCCCGGTCCCGGCAgg                                                                                                                                 >  1:4643641/1‑150 (MQ=255)

                      atgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAggg                                                                                                                                <  2:3076338/150‑1 (MQ=255)

                       tgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCCCGGGCACGGCAgggg                                                                                                                               >  1:4731463/1‑150 (MQ=255)

                        gaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGc                                                                                                                              <  1:3987895/150‑1 (MQ=255)

                          aCAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCCCGGTCACGGCAGGGGCgg                                                                                                                            >  1:6980608/1‑149 (MQ=255)

                           cAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTc                                                                                                                           <  1:6098545/150‑1 (MQ=255)

                           cAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCCGGGTCACGGCAGGGGCGTc                                                                                                                           >  1:2124087/1‑150 (MQ=255)

                            aGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTcc                                                                                                                          <  2:5445781/150‑1 (MQ=255)

                            aGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCCGGGGCACGGCCGGGGCGGcc                                                                                                                          >  1:123768/1‑150 (MQ=255)

                            aGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGAGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCAAGGCAGGGGCGTcc                                                                                                                          >  2:4415452/1‑150 (MQ=255)

                                aCTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCa                                                                                                                      >  2:6459138/1‑150 (MQ=255)

                                  ttGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGc                                                                                                                    <  1:4415452/150‑1 (MQ=255)

                                  ttGCCAATCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGACATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCAGGCGCGCCAGGGTCACGGCAGGGGCGTCCATAAGc                                                                                                                    >  2:1796592/1‑150 (MQ=255)

                                       aTTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGacac                                                                                                               >  2:1445795/1‑150 (MQ=255)

                                        ttCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGAcaca                                                                                                              >  2:2049838/1‑150 (MQ=255)

                                           aGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCCGCGACACAAcc                                                                                                           >  2:3227878/1‑150 (MQ=255)

                                           aGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATcc                                                                                                           <  2:3688910/150‑1 (MQ=255)

                                            gCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCt                                                                                                          >  2:2775567/1‑150 (MQ=255)

                                              tCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGc                                                                                                        <  2:3671507/150‑1 (MQ=255)

                                               cAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCa                                                                                                       <  1:4987053/150‑1 (MQ=255)

                                                aaTGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAg                                                                                                      >  2:3050942/1‑150 (MQ=255)

                                                     gcgcACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCCGGGTCACGGCCGGGGCGGCCAGCAGCGACCCATCCAGCAGGTCCa                                                                                                 >  1:312461/1‑150 (MQ=255)

                                                      cgcACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCAc                                                                                                <  2:6607070/150‑1 (MQ=255)

                                                                     gCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggcggc                                                                                 <  1:6729749/150‑1 (MQ=255)

                                                                     gCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggcggc                                                                                 >  2:4553047/1‑150 (MQ=255)

                                                                      cGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGGCTGGCGCGCCACGGTCACCGCAGGGGCGTCCAACAGCGACACAAAATGCAGTTACACCCACAGGGTggcggca                                                                                >  1:5785305/1‑150 (MQ=255)

                                                                           gCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggcggcaggcgg                                                                           <  1:1599408/150‑1 (MQ=255)

                                                                           gCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATAAGCGACAAAACCTGCAGTTACACGCTCAGGGTggcggcaggcgg                                                                           >  1:1166034/1‑150 (MQ=255)

                                                                              aGGCTTGACCTGCGCGGGGTCTTAGGTGAGATGGAACGGCAGCGGCTCGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGgcggcaggcggcag                                                                        <  2:5806491/150‑1 (MQ=255)

                                                                                    gACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAAt                                                                  <  2:1163575/150‑1 (MQ=255)

                                                                                      ccTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCAGGCGCGCCCGGGTCACGGCAGGGGCGGCCCACAGCGACACCACCAGCAGGTCCACGCGCAGGGTGGCGGCAGGCGGCCGGGcccagc                                                                >  1:4519355/1‑145 (MQ=255)

                                                                                       cTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATgcg                                                               >  2:6192340/1‑150 (MQ=255)

                                                                                       cTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCAGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACAACCAGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCCATgcg                                                               >  2:5169273/1‑150 (MQ=255)

                                                                                         gcgcGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCt                                                             <  1:106138/150‑1 (MQ=255)

                                                                                             ggggTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAg                                                         <  1:90271/150‑1 (MQ=255)

                                                                                             ggggTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAg                                                         <  2:6328415/150‑1 (MQ=255)

                                                                                              gggTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAgg                                                        <  1:654544/150‑1 (MQ=255)

                                                                                               ggTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGt                                                       <  1:6216996/150‑1 (MQ=255)

                                                                                                gTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTa                                                      <  1:5599646/150‑1 (MQ=255)

                                                                                                gTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTa                                                      <  2:7342049/150‑1 (MQ=255)

                                                                                                   aTAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTagaa                                                   <  2:4849511/150‑1 (MQ=255)

                                                                                                      ggTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTTGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggc                                                                                    <  1:2612765/114‑1 (MQ=255)

                                                                                                      ggTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGAc                                                >  1:4841963/1‑150 (MQ=255)

                                                                                                       gTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACt                                               <  2:3765401/150‑1 (MQ=255)

                                                                                                        tGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCGGGCGCGCCCGGGTCACGGCCGGGGCGGCCATCAGCGACACAAACAGCAGTTCAACGCGCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGGAGAAGAcat                                              >  1:859833/1‑148 (MQ=255)

                                                                                                        tGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCAGGCGCGCCACGGTCACCGCAGGGGCGTCCATCAGCCACACAACCAGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACtt                                              >  2:12498/1‑150 (MQ=255)

                                                                                                            aTGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACCTCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCGGCCGGTAGAAGACTTCAcc                                          >  2:722526/1‑150 (MQ=255)

                                                                                                            aTGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCAACAGCGACACAAACAGCAGTTCCACGCTCCGGGTGGCGGCCGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCAcc                                          >  1:5856335/1‑150 (MQ=255)

                                                                                                                aaCGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTcc                                      <  1:1985980/150‑1 (MQ=255)

                                                                                                                   ggCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAgg                                   <  1:3556836/150‑1 (MQ=255)

                                                                                                                    gCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCACGGTCACGGCAGGGGCGGCCATCACCGACACAACCAGCAGTTCCACGCTCAGGGTGGCGGCCGGCGGCAGGGCACTGCGCTGCAGGTAGAAGACTTCACCCTCCAGGc                                  >  1:5271821/1‑150 (MQ=255)

                                                                                                                         ggCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGcc                             >  2:5262012/1‑150 (MQ=255)

                                                                                                                             cGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGt                         <  2:7395807/150‑1 (MQ=255)

                                                                                                                              gTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGtt                        <  1:5999173/150‑1 (MQ=255)

                                                                                                                                  ccTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTtgggt                    <  2:5998739/150‑1 (MQ=255)

                                                                                                                                   cTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCGCAGGGTGGCGGCCGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCCTCCAGGCTGGCCTGGTtgggtg                   >  1:7111268/1‑150 (MQ=255)

                                                                                                                                   cTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACCGCAGGGGCGTCCAACAGCGACACAACCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGGCCAGGCTGGCCTGGTtgggtg                   >  1:2363190/1‑150 (MQ=255)

                                                                                                                                    tttGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTtgggtgg                  <  1:1646903/150‑1 (MQ=255)

                                                                                                                                    tttGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTtgggtgg                  <  2:6980608/150‑1 (MQ=255)

                                                                                                                                     ttGACCGGGCCGGCCTGGCTCGCCAGGGTCACGGCAGGGGCGTCCTTGAGCGACACATCCTGCAGTTACACGCTCAGGGTGGAGGAAGTCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTtgggtggg                 <  1:2482981/150‑1 (MQ=255)

                                                                                                                                     ttGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTtgggtggg                 <  2:5410636/150‑1 (MQ=255)

                                                                                                                                     ttGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCGGGCCTGGTtgggtggg                 <  1:6263927/150‑1 (MQ=255)

                                                                                                                                      tgcccGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTgggg                <  2:5512223/147‑1 (MQ=255)

                                                                                                                                         ccGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGttt             <  2:4643641/150‑1 (MQ=255)

                                                                                                                                         ccGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGttt             <  2:2498944/150‑1 (MQ=255)

                                                                                                                                           gggCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGGTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTgg           <  2:2886336/150‑1 (MQ=255)

                                                                                                                                            cgtgacccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGGCTGGTTGGGTGGGGTTTGGc          >  2:4739517/7‑150 (MQ=255)

                                                                                                                                              ccggccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTg        <  2:2279913/150‑1 (MQ=255)

                                                                                                                                               cggccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTgg       <  1:6348940/150‑1 (MQ=255)

                                                                                                                                               cggccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTgg       >  1:1417862/1‑150 (MQ=255)

                                                                                                                                               cggccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTgg       >  1:6655784/1‑150 (MQ=255)

                                                                                                                                                ggccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTGGa      <  2:1109142/150‑1 (MQ=255)

                                                                                                                                                ggccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTGGa      <  1:6764257/150‑1 (MQ=255)

                                                                                                                                                 gccTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTGGAg     >  1:4325974/1‑150 (MQ=255)

                                                                                                                                                   cTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTGGAGCa   >  2:821645/1‑150 (MQ=255)

GACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAGGCTGGCCTGGTTGGGTGGGGTTTGGCTGGAGCAG  >  NC_002947/1730250‑1730547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`