Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,039,340 A→T 5.2% intergenic (+164/+1277) pgi‑I → / ← PP_5477 glucose 6‑phosphate isomerase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,039,3400AT 5.2% 962.9 / 17.7 278intergenic (+164/+1277)pgi‑I/PP_5477glucose 6‑phosphate isomerase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (133/127);  new base T (5/12);  total (139/139)
Fisher's exact test for biased strand distribution p-value = 1.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 282 total aligned reads displayed.

GCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTCACATCAAC  >  NC_002947/2039192‑2039488
                                                                                                                                                    |                                                                                                                                                    
gCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTaa                                                                                                                                                     <  1:3791232/150‑1 (MQ=255)
gCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTaa                                                                                                                                                     >  1:4570893/1‑150 (MQ=255)
     gctggaggaGCGTCAGATCGGAGCTGGTTGTCTCATGAAACACTAGCGCATCATGGCGGTTAATAGCTGGCCGCTTTTCGACGCATATGTTGTACAGTCAACTGGGTAGGTAATTATCAGATTTTGTCATCCATCCAAGTGCTTATGctc                                                                                                                                                <  2:503073/147‑1 (MQ=255)
      cggGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGctct                                                                                                                                               <  2:1049087/150‑1 (MQ=255)
      cggGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGctct                                                                                                                                               <  1:2873088/150‑1 (MQ=255)
       gggAGGAGCGTCCGAGCTGAGCTTGTGGTCGCCGGAAACACTAGCTCATCATGGAGGTGAATAGCAGGCCGCATTTCTACTCAGAGGTGGTACAGTCAACTGTGTAGGTATTTCGCAGATTTTGTAATCCATCCAAGTGCTAATGCTCtt                                                                                                                                              <  1:4885499/150‑1 (MQ=255)
       gggAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCtt                                                                                                                                              <  1:2488750/150‑1 (MQ=255)
          aggagCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGAAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGa                                                                                                                                           >  1:2103489/1‑150 (MQ=255)
            gagCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATg                                                                                                                                         <  2:4902403/150‑1 (MQ=255)
               cGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATgggg                                                                                                                                      <  1:4523539/150‑1 (MQ=255)
               cGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCACCCATCCAAGAGCATTAGCACTTGGATggat                                                                                                                                      <  1:5722457/150‑3 (MQ=255)
                  ccGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGAGCATTAGCACTTGGATggatgac                                                                                                                                   <  2:3043633/150‑6 (MQ=255)
                   cGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCa                                                                                                                                  >  1:1038387/1‑150 (MQ=255)
                    gAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGACTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAg                                                                                                                                 >  1:5954973/1‑150 (MQ=255)
                     aGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGt                                                                                                                                <  1:2610524/150‑1 (MQ=255)
                        ggAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTccc                                                                                                                             >  1:1220831/1‑150 (MQ=255)
                        ggAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTccc                                                                                                                             >  2:2712639/1‑150 (MQ=255)
                        ggAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTccc                                                                                                                             >  2:1080206/1‑150 (MQ=255)
                         gAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCa                                                                                                                            <  2:6574156/150‑1 (MQ=255)
                         gAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCa                                                                                                                            <  1:3855750/150‑1 (MQ=255)
                              ggtggtCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTtgt                                                                                                                       <  2:5416156/150‑1 (MQ=255)
                              ggtggtCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGACTGAGCCCCatccaa                                                                                                                       <  2:3779969/150‑6 (MQ=255)
                              gctggtCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTtgt                                                                                                                       >  2:5886330/3‑150 (MQ=255)
                               gtggtCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATgggg                                                                                                                                      >  2:4274169/1‑134 (MQ=255)
                               gtggtCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATgggg                                                                                                                                      <  1:4274169/134‑1 (MQ=255)
                                tggtCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGa                                                                                                                     <  2:4486753/150‑1 (MQ=255)
                                 ggtCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGAc                                                                                                                    <  1:4033953/150‑1 (MQ=255)
                                     gCCTGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTaga                                                                                                                <  2:3518129/150‑1 (MQ=255)
                                     gCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTaga                                                                                                                <  2:1860834/150‑1 (MQ=255)
                                     gCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTaga                                                                                                                >  2:2201078/1‑150 (MQ=255)
                                      ccGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTagag                                                                                                               <  1:4608832/150‑1 (MQ=255)
                                      ccGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATGTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTagag                                                                                                               <  2:6285260/150‑1 (MQ=255)
                                             cacTAGCGCCTCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGa                                                                                                        <  2:6803815/150‑1 (MQ=255)
                                              acTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGaa                                                                                                       >  1:7273772/1‑150 (MQ=255)
                                              acTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGaa                                                                                                       <  2:201418/150‑1 (MQ=255)
                                              acTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGaa                                                                                                       >  2:3380409/1‑150 (MQ=255)
                                               cTAGCGCATCATGGCGGTGAATAGCAGGCCGCGTTTCGACGCTGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAAt                                                                                                      <  2:2291936/150‑1 (MQ=255)
                                                   cgcATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCGTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTAc                                                                                                  >  2:7126155/1‑150 (MQ=255)
                                                     catcatGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGACATCCATCCAAGTGCTTATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACaa                                                                                                <  2:5153072/150‑1 (MQ=255)
                                                        catGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGc                                                                                             >  2:6973197/1‑150 (MQ=255)
                                                         atGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCa                                                                                            <  1:3623750/150‑1 (MQ=255)
                                                              ggTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCt                                                                                       <  1:3911163/150‑1 (MQ=255)
                                                               gTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTg                                                                                      <  1:2360382/150‑1 (MQ=255)
                                                                tGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGc                                                                                     >  1:5465234/1‑150 (MQ=255)
                                                                tGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGc                                                                                     <  2:708558/150‑1 (MQ=255)
                                                                ggAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGc                                                                                     <  2:6002036/149‑1 (MQ=255)
                                                                 gAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCt                                                                                    >  1:4974538/1‑150 (MQ=255)
                                                                 gAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCt                                                                                    <  2:3120842/150‑1 (MQ=255)
                                                                    tAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAAt                                                                                 >  1:5916807/1‑150 (MQ=255)
                                                                        aGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCt                                                                             >  2:850412/1‑150 (MQ=255)
                                                                           ccGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCa                                                                          >  1:1807750/1‑150 (MQ=255)
                                                                            cGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCaa                                                                         >  2:2096512/1‑150 (MQ=255)
                                                                             gCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAAt                                                                        >  1:3024266/1‑150 (MQ=255)
                                                                              cATTTCGACGCAGAGGTGGTACAGTCCACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAAtt                                                                       <  2:4828727/150‑1 (MQ=255)
                                                                              cATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAAtt                                                                       <  1:4369224/150‑1 (MQ=255)
                                                                                 ttCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGcc                                                                    <  2:5798721/150‑1 (MQ=255)
                                                                                  tCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGccc                                                                   <  1:2722890/150‑1 (MQ=255)
                                                                                          gagGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGa                                                           <  1:1321059/150‑1 (MQ=255)
                                                                                          gagGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGa                                                           >  2:1973835/1‑150 (MQ=255)
                                                                                             gtggtACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATgc                                                        >  2:3227120/1‑150 (MQ=255)
                                                                                                gtACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCt                                                     <  1:3006531/150‑1 (MQ=255)
                                                                                                 tACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTg                                                    >  2:1604139/1‑150 (MQ=255)
                                                                                                        aaCAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTc                                             <  1:6378979/150‑1 (MQ=255)
                                                                                                        aaCAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTc                                             >  2:2869582/1‑150 (MQ=255)
                                                                                                        aaCAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTc                                             >  2:7305165/1‑150 (MQ=255)
                                                                                                        aaCAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTc                                             >  1:3415057/1‑150 (MQ=255)
                                                                                                        aaCAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTc                                             >  2:3704218/1‑150 (MQ=255)
                                                                                                             ggtaggtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGaaa                                        <  1:6032410/150‑1 (MQ=255)
                                                                                                              gtaggtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAAt                                       <  1:4025960/150‑1 (MQ=255)
                                                                                                               taggtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGTGTCCTc                                             <  2:6491115/143‑1 (MQ=255)
                                                                                                                aggtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGa                                     <  1:6202275/150‑1 (MQ=255)
                                                                                                                 ggtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGaa                                    <  2:4155116/150‑1 (MQ=255)
                                                                                                                 ggtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGaa                                    >  2:6261079/1‑150 (MQ=255)
                                                                                                                 ggtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGaa                                    <  1:1718084/150‑1 (MQ=255)
                                                                                                                  gtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAg                                   >  1:6548246/1‑150 (MQ=255)
                                                                                                                  gtaATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATATGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGaat                                   >  1:5991845/1‑149 (MQ=255)
                                                                                                                    aaTTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGAc                                 >  2:614758/1‑150 (MQ=255)
                                                                                                                      ttCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACgg                               <  2:4570893/150‑1 (MQ=255)
                                                                                                                      ttCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACgg                               >  2:2905201/1‑150 (MQ=255)
                                                                                                                         gCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTga                            >  1:3279651/1‑150 (MQ=255)
                                                                                                                           aGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTgaga                          >  2:7247843/1‑150 (MQ=255)
                                                                                                                              ttttGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGt                       <  1:6979798/150‑1 (MQ=255)
                                                                                                                               tttGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAATACGGTGAGAGGTa                      >  1:2051507/1‑150 (MQ=255)
                                                                                                                                    catccatcCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACa                 <  2:5578698/150‑1 (MQ=255)
                                                                                                                                     atccatccAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAg                >  1:2197411/1‑150 (MQ=255)
                                                                                                                                     atccatccAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAg                >  2:5303633/1‑150 (MQ=255)
                                                                                                                                     atccatccAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAg                >  1:1410460/1‑150 (MQ=255)
                                                                                                                                     atccatccAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAg                >  1:6431251/1‑150 (MQ=255)
                                                                                                                                     atccatccAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAg                >  1:3145330/1‑150 (MQ=255)
                                                                                                                                     atccatccAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAg                <  1:5211478/150‑1 (MQ=255)
                                                                                                                                      cccatccaAGAGCATTAGCACTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAgg               >  1:4676764/2‑150 (MQ=255)
                                                                                                                                       ccatccaAGAGCATTAGCACTTGGATGGGGCTCAGTCCCAGTTGTGTCTAGAGGATCTGAATGTACAATGCACTTCTGCTTATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTcc                                               <  2:4029546/117‑1 (MQ=255)
                                                                                                                                        catccaAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCg             >  2:608486/1‑150 (MQ=255)
                                                                                                                                          tccaAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGtt           <  1:1590904/150‑1 (MQ=255)
                                                                                                                                            caAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTca         <  1:88382/150‑1 (MQ=255)
                                                                                                                                             aaGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTcac        >  1:6852011/1‑150 (MQ=255)
                                                                                                                                             aaGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTcac        >  2:7264967/1‑150 (MQ=255)
                                                                                                                                                tGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTCACATc     >  1:6606404/1‑150 (MQ=255)
                                                                                                                                                  cTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTca         >  2:5958943/1‑144 (MQ=255)
                                                                                                                                                  cTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTCACATCaa   >  1:2235341/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGGGCTCAGTCCCAGTTGTGACTAGAGGATCTGAATGTACAATGCACTTCTGCTAATCGCTGCAATTGCCCTTACCGGATGCGCTGCGTCCTCGGAAATGAAGACGGTGAGAGGTAAGACAGGCGTTCACATCAAC  >  NC_002947/2039192‑2039488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: