BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,513,781	A→T	9.8%	M109K (ATG→AAG)	PP_2203 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,513,781	0	A	T	9.8%	867.8 / 44.5	324	M109K (ATG→AAG)	PP_2203	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (187/93); new base T (12/24); total (200/124)
Fisher's exact test for biased strand distribution p-value = 1.70e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 326 total aligned reads displayed.

GGCGGCACCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGCGTTGCTTGACG  >  NC_002947/2513634‑2513930

 gcggcACCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGc                                                                                                                                                     <  2:943991/150‑1 (MQ=255)

   ggcACCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGccc                                                                                                                                                   >  2:4918668/1‑150 (MQ=255)

   ggcACCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGccc                                                                                                                                                   <  1:3574878/150‑1 (MQ=255)

     cACCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCgg                                                                                                                                                 >  1:4388011/1‑150 (MQ=255)

      aCCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑c                                                                                                                                               <  2:2358940/150‑1 (MQ=255)

      aCCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑c                                                                                                                                               <  1:719367/150‑1 (MQ=255)

      aCCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑c                                                                                                                                               >  1:149320/1‑150 (MQ=255)

         aaaGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCATGCCCATGGGCTCGCCCGG‑Catg                                                                                                                                            <  2:4391304/150‑3 (MQ=255)

           aGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGc                                                                                                                                          <  2:6569613/150‑1 (MQ=255)

              cgcTGAGAAACCGCGCCCCTAGGCTGAGCATCCGTAGTGGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTTGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCTTGGGCATGCCCGG‑CACCGCCAg                                                                                                                                       <  2:6047904/150‑1 (MQ=255)

                 tGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGcc                                                                                                                                    >  2:567080/1‑150 (MQ=255)

                 tGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGcc                                                                                                                                    >  2:2732431/1‑150 (MQ=255)

                    gaAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCtt                                                                                                                                 >  2:5235673/1‑150 (MQ=255)

                     aaaCAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGTTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACAGCCAGGCCCTTg                                                                                                                                >  1:83324/1‑150 (MQ=255)

                     aaaCAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTg                                                                                                                                >  2:2792287/1‑150 (MQ=255)

                     aaaCAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTg                                                                                                                                >  1:1578388/1‑150 (MQ=255)

                       accgcgcCCCTCGGCTGAGCATCATTTGTTGGCGACCAGGGTGTCGTGGCCATCCTGGGTCACCCCGTTGACCTGTTTGGCATCCTTGTGTTCACCCATCTCCATGCCGGGGGAGCCCTTGGGCTTGCCCGG‑CACCGCCAGGCCCTTGAg                                                                                                                              <  2:1039190/147‑1 (MQ=255)

                         aGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGt                                                                                                                            >  1:2240169/1‑150 (MQ=255)

                         aGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGt                                                                                                                            >  2:3815862/1‑150 (MQ=255)

                          gcgcCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTc                                                                                                                           >  1:5359270/1‑150 (MQ=255)

                           cgcCCCTCGGCTGAGCATCAGTAGTGGGCGACCACGGGGTCCTGGCCAGCCTGGGTCACCCCTATGCCCTGTTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGCGCCCATGGGCAGGCCCGG‑CACCGCCAGGCCCTTGAGGTCg                                                                                                                          <  2:7152520/150‑1 (MQ=255)

                              cccTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTg                                                                                                                       >  2:7579/1‑150 (MQ=255)

                              cccTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTGGAGGTCGTTg                                                                                                                       >  2:373738/1‑150 (MQ=255)

                                      tGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGc                                                                                                               >  1:3856468/1‑150 (MQ=255)

                                      tGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGc                                                                                                               >  1:2879751/1‑150 (MQ=255)

                                        cgCATAAGTTGTGGGCGACCCGGGGGTCCTGGCCAGCCGGGGCCACCCCGATGACCTGTTAGGCATCGTTGTGGCCACCCATCCCCAGGCCGGGCGAGCCCTGGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCca                                                                                                             <  1:2371355/149‑1 (MQ=255)

                                          cATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCcagc                                                                                                           >  1:4965451/1‑150 (MQ=255)

                                           aaccgtagtGGGCCCCCCCGGGGCCCTGGCCCGCCGGTGACCCCCCGATGCCCGGGTAGGCACCCTTGGGGACACCCATCTCCCTGCGGGGCGCCCACTTGGGCTTGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCcagca                                                                                                          <  1:508313/146‑1 (MQ=255)

                                            tCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCATGCCCATGGGCTCGCCCg                                                                                                                                                  <  2:4302032/110‑1 (MQ=255)

                                             cAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCggg                                                                                                        >  1:5810575/1‑150 (MQ=255)

                                                tagtTGGCGCCCACGGGGGCCTGGCCAGCCTGGGCCACCCCGAGGCCCGGGTCGGCAGCCTGGGGGTCACCCATCTCCCGGCGGGGCGCGCCCCGGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGgtgc                                                                                                     <  2:4141770/150‑1 (MQ=255)

                                                tagtTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGgcgc                                                                                                     >  1:7414881/1‑150 (MQ=255)

                                                  gtTGGCGACCAGGTTGTCCTGGCCTTCGTGGGTCACCCCGTTGACCTGTTAGGAAGCCTTGGGGACACCCATCTCCATGCCGGGCGAGCCCTGGGGCAGGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCAc                                                                                                   <  1:6049986/150‑1 (MQ=255)

                                                  gtTGGCGACCAGGGTGTCCTGGCCTTCGTGGGTCACCCCGATGACCTGGTTGGCATCCTTGTGGTCACCAATCGCCATGCCGGGGGAGCCCTTGGGCTTGCCGGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCAc                                                                                                   <  2:4041268/150‑1 (MQ=255)

                                                        gACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTc                                                                                             >  2:116998/1‑150 (MQ=255)

                                                            aCGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTcggcc                                                                                         <  2:5995331/150‑1 (MQ=255)

                                                            aCGGTGCCGTGGCCAGCCGGGGGCCCCCCCATGCCCTGGTAGGCAGCCTGGGGGTCACCCAACCCCATGCGGGGCGCCCCATTGGGCTTGCCGGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTcggcc                                                                                         <  1:2842957/150‑1 (MQ=255)

                                                              ggTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTcggccgg                                                                                       >  2:3445823/1‑150 (MQ=255)

                                                               gtgtCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTcggccggc                                                                                      <  2:4965451/150‑1 (MQ=255)

                                                                  tCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACg                                                                                   >  2:6844655/1‑150 (MQ=255)

                                                                     tGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTgg                                                                                >  2:1689846/1‑150 (MQ=255)

                                                                     tGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTgg                                                                                <  2:4857797/150‑1 (MQ=255)

                                                                     tGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTgg                                                                                >  2:213313/1‑150 (MQ=255)

                                                                     tGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTgg                                                                                >  2:7043391/1‑150 (MQ=255)

                                                                      ggCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGc                                                                               >  1:4304833/1‑150 (MQ=255)

                                                                         cATCCTGGGTCACCCCGATGACCTGGTCGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGGTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCtt                                                                            >  1:3266096/1‑150 (MQ=255)

                                                                          aTCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTc                                                                           >  1:567928/1‑150 (MQ=255)

                                                                           tCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTcg                                                                          >  1:4126959/1‑150 (MQ=255)

                                                                            ccTGGGTCACCCCGATGACCTGGTTGGCATCCTTGTGGTCACCCATGTCCTTGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTcga                                                                         <  2:1628694/150‑1 (MQ=255)

                                                                            ccTGGGCCACCCCGATGACGTGGTTGGCATCCTTGGGGACACCCATCTCCAGGCCGGGCGAGCCACTGGGCTTGCCCGC‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTcga                                                                         <  1:1141127/150‑1 (MQ=255)

                                                                                ggTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTcgacgac                                                                     >  1:2500995/1‑149 (MQ=255)

                                                                                     ccccGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTgc                                                                >  1:6406754/1‑150 (MQ=255)

                                                                                      cccGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGTATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTgcc                                                               >  2:5468231/1‑150 (MQ=255)

                                                                                      cccGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTgcc                                                               >  1:6973919/1‑150 (MQ=255)

                                                                                      cccGATGACCTGGTAGGCATCCGTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCCCGTGGCCTTCGACGAACTTgcc                                                               >  2:6314416/1‑150 (MQ=255)

                                                                                           ggccgtGGTCGGCATCCTTGTGGTCCCCCAACTCCATGCCGGGCGAGCCCTGGGGCTGGCCCGC‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGa                                                          <  1:4099133/145‑1 (MQ=255)

                                                                                              ccTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCGCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCa                                                       >  2:5847290/1‑150 (MQ=255)

                                                                                                tGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCAcc                                                     >  2:3634563/1‑150 (MQ=255)

                                                                                                   ttggCTTCTTTTTGGACACCAATCTCCTGGCCGGGCGACCCCTTGGGC‑TGCCCGGCCACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCg                                                  <  1:5200429/148‑1 (MQ=255)

                                                                                                     ggaaTCCTTGTGGTCACCCATCTCCTTGCCGGGCGAGCCCAGGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGgt                                                <  1:2351213/147‑1 (MQ=255)

                                                                                                            ttGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCac                                         >  2:2076438/1‑150 (MQ=255)

                                                                                                            ttGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCac                                         >  1:6236297/1‑150 (MQ=255)

                                                                                                                ggTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCacgacg                                     >  2:6468470/1‑150 (MQ=255)

                                                                                                                 gTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGc                                    >  2:1308575/1‑150 (MQ=255)

                                                                                                                      ccATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGc                               >  1:6898454/1‑150 (MQ=255)

                                                                                                                      ccATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGc                               >  2:3055944/1‑150 (MQ=255)

                                                                                                                      ccATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGc                               >  1:2124610/1‑150 (MQ=255)

                                                                                                                      ccATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGc                               >  1:4677550/1‑150 (MQ=255)

                                                                                                                      ccATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTCCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGc                               >  2:6877024/1‑150 (MQ=255)

                                                                                                                        aTCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTGGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGCTCACCCCGGTGTGGCCCGACGCAAGGCGt                             >  2:4745185/1‑150 (MQ=255)

                                                                                                                        aTCTCCAGGCGGGGCGCGCCCTGGGGCAGGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGt                             <  2:703308/150‑1 (MQ=255)

                                                                                                                          ctcCATGCCGGGCGAGCCCATGGGCAGGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTgg                           <  2:3847769/150‑1 (MQ=255)

                                                                                                                          ctcCAGGCGGGGCTAGCCCAGGGCCAGCCCCGC‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTgg                           <  1:689945/150‑1 (MQ=255)

                                                                                                                             ggtGCCGGGCATGCCCATGGGCTCGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGgcgc                        >  1:2187744/3‑150 (MQ=255)

                                                                                                                             cctGCCGGGCGAGCCCAGGGGCAGGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGgcgc                        <  2:6406754/148‑1 (MQ=255)

                                                                                                                               tGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCa                      >  1:1011624/1‑150 (MQ=255)

                                                                                                                               tGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCa                      >  1:4739693/1‑150 (MQ=255)

                                                                                                                                 ccGGGCATGCCCATGGGCTCGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGGTTGGCCAGCAGGCGCACATGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGAAGCAAGGCGTGGCGCCACg                    >  1:7275249/1‑150 (MQ=255)

                                                                                                                                   gggcatgCCCATGGGCTCGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGcc                  >  1:6544756/7‑150 (MQ=255)

                                                                                                                                   gggCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGcc                  >  2:3980394/1‑150 (MQ=255)

                                                                                                                                    ggcatgCCCATGGGCTCGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCg                 >  2:247404/6‑150 (MQ=255)

                                                                                                                                    ggCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGcct                 <  2:3581492/150‑2 (MQ=255)

                                                                                                                                    ggCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCg                 >  1:1738122/1‑150 (MQ=255)

                                                                                                                                    ggCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCg                 >  2:4625606/1‑150 (MQ=255)

                                                                                                                                     gCGACCCCATGGCCAGGCCCGC‑CACCGCCAGGCCCTTGAGGTCGTTGCGATTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGa                <  1:499241/150‑1 (MQ=255)

                                                                                                                                      cGAGCCCAGGGGCCTGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAg               <  2:3289165/150‑1 (MQ=255)

                                                                                                                                      cGAGCCCAGGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGCGTGGCGCCACGCCTTGCGTCGTGCCACACCggg               <  2:4783201/150‑3 (MQ=38)

                                                                                                                                       gAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAgg              >  1:3826572/1‑150 (MQ=255)

                                                                                                                                        cgCCCAGGGGCAGGCCCGC‑CACCGCCCGGCCCTGGCGGTCGTGGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGc             <  1:4918904/149‑1 (MQ=255)

                                                                                                                                         gCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGcctt                <  1:3704393/146‑3 (MQ=255)

                                                                                                                                         gCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGCg            >  2:877230/1‑150 (MQ=255)

                                                                                                                                           ccATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGCGtt          >  1:3058210/1‑150 (MQ=255)

                                                                                                                                           ccATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGCGtt          >  2:5641551/1‑150 (MQ=255)

                                                                                                                                           ccATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGCGtt          >  1:5463475/1‑150 (MQ=255)

                                                                                                                                           ccATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGCGTGGCGCCACGCCTTGCGTCGTGCCACACCg                 <  2:1525886/143‑1 (MQ=38)

                                                                                                                                            cATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGCGTTg         <  2:2945370/150‑1 (MQ=255)

                                                                                                                                              ggggCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGTGTGGCGCCACGCCGAGGCgccacg       <  1:4867330/149‑6 (MQ=255)

                                                                                                                                               gggCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCacgacg                                     <  2:1870651/119‑1 (MQ=255)

                                                                                                                                               gggCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCacgacg                                     >  1:1870651/1‑119 (MQ=255)

                                                                                                                                                ggCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGGGTGGCACGACGCGAGGCGTGGCGCCACGCCGAGGCGTTGCTTg     >  2:720932/1‑150 (MQ=255)

GGCGGCACCAAAGGCGCTGAGAAACAGCGCCCCTAGGCTGAGCATCAGTAGTTGGCGACCACGGTGTCCTGGCCATCCTGGGTCACCCCGATGACCTGGTAGGCATCCTTGTGGTCACCCATCTCCATGCCGGGCGAGCCCATGGGCATGCCCGG‑CACCGCCAGGCCCTTGAGGTCGTTGCGTTTGGCCAGCAGGCGCACCTGCTCGGCCGGCACGTGGCCTTCGACGAACTTGCCGCCGATCACCCCGGTGTGGCACGACGCAAGGCGTGGCGCCACGCCGAGGCGTTGCTTGACG  >  NC_002947/2513634‑2513930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`