BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,698,802	T→C	9.2%	V34A (GTC→GCC)	PP_2362 →	usher protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,698,802	0	T	C	9.2%	809.6 / 33.3	286	V34A (GTC→GCC)	PP_2362	usher protein
Reads supporting (aligned to +/- strand): ref base T (146/105); new base C (3/22); total (149/137)
Fisher's exact test for biased strand distribution p-value = 8.59e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 290 total aligned reads displayed.

TCAACACTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGT  >  NC_002947/2698653‑2698951

tCAACACTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGt                                                                                                                                                       >  1:3466533/1‑150 (MQ=255)

tCAACACTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGt                                                                                                                                                       <  1:138803/150‑1 (MQ=255)

   acacTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAg                                                                                                                                                    >  2:283898/1‑150 (MQ=255)

    cacTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGc                                                                                                                                                   <  1:1591246/150‑1 (MQ=255)

    cacTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGACCATGGCCAGc                                                                                                                                                   <  1:61423/150‑1 (MQ=255)

     acTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGACCATGGCCAGcc                                                                                                                                                  <  1:460211/150‑1 (MQ=255)

     acTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCCGGGGCTGACCATGGCCAGcc                                                                                                                                                  <  1:6675956/150‑1 (MQ=255)

     acTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGGGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGcc                                                                                                                                                  >  2:2861518/1‑150 (MQ=255)

      cttggcggATGGCGTCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGccc                                                                                                                                                 >  1:6382790/4‑150 (MQ=255)

      cTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGACCATGGCCAGccc                                                                                                                                                 <  2:4178938/150‑1 (MQ=255)

       tCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGcccc                                                                                                                                                >  1:4496019/1‑150 (MQ=255)

         ggcggACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCcgc                                                                                                                                              <  1:7123179/150‑1 (MQ=255)

             gACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTg                                                                                                                                          <  1:5769046/150‑1 (MQ=255)

             gACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTg                                                                                                                                          <  1:4038858/150‑1 (MQ=255)

             gACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCCGGGGCTGACCATGGCCAGccccaggcac                                                                                                                                          <  1:1011688/150‑7 (MQ=255)

              aCGCCATCCGCCACGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCTGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTgg                                                                                                                                         <  2:6540734/150‑1 (MQ=255)

              aCGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTgg                                                                                                                                         >  1:409446/1‑150 (MQ=255)

                  cATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACt                                                                                                                                     >  1:2012757/1‑150 (MQ=255)

                  cATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACt                                                                                                                                     >  2:1556363/1‑150 (MQ=255)

                   aTCCGCCAAGGCCAATGAGCCAACGGCCGAGTGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTg                                                                                                                                    >  2:6009162/1‑150 (MQ=255)

                    tCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTgg                                                                                                                                   <  2:2012757/150‑1 (MQ=255)

                     ccGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCCGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGc                                                                                                                                  <  2:4930150/150‑1 (MQ=255)

                     ccGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGc                                                                                                                                  <  2:3609615/150‑1 (MQ=255)

                       gacAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTg                                                                                                                                          <  1:3232459/138‑1 (MQ=255)

                        ccAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCcga                                                                                                                               >  2:5198031/1‑150 (MQ=255)

                         cAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCcgac                                                                                                                              >  1:2334371/1‑150 (MQ=255)

                         cAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCcgac                                                                                                                              <  2:5571661/150‑1 (MQ=255)

                         cAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCcgac                                                                                                                              >  1:2464665/1‑150 (MQ=255)

                           aGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCcgacga                                                                                                                            >  2:2749076/1‑150 (MQ=255)

                              caaaggAGCCAACGGCCTAATGAAGTGCAGGGGCCAGGGAGGCCCGGGAATTGTTTGTAAACCGTTTTTGAAAGGGCTCCCGGCGAGGAGGTGCCGCTGGTGCGTGGGGCGGGCCTTGGTCAGCCCCGCGCTGGTACTGGCCGACGACtt                                                                                                                         <  1:5015309/145‑1 (MQ=255)

                                actGAGCCAACGGCCGATTGACGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGc                                                                                                                       <  1:4245965/148‑1 (MQ=255)

                                 aTGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAAGGGCTCCCGGCGACGCCGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGcc                                                                                                                      <  2:5804266/150‑1 (MQ=255)

                                 aTGAGCCAACGGCCGAAGGACGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCGCCCGGCGACGCCGTGCCGCGGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGcc                                                                                                                      <  2:3752280/150‑1 (MQ=255)

                                     gCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCa                                                                                                                  <  2:6044646/150‑1 (MQ=255)

                                          cGGCCGAATGATGGGCCGGGGCCTGGGAGGACCCGGCAATGGTTGGAAACGGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGcc                                                                                                             <  1:3679307/150‑1 (MQ=255)

                                             ccGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCAc                                                                                                          >  1:6010596/1‑150 (MQ=255)

                                             ccGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCAc                                                                                                          >  1:2803257/1‑150 (MQ=255)

                                              cGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACg                                                                                                         >  2:5441457/1‑150 (MQ=255)

                                               gAATGAAGTGCAGGGGCAAGGGAGGACACGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGAGCAGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACgg                                                                                                        >  2:6478634/1‑150 (MQ=255)

                                                aaTGATGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAATTGGCTCCCGGCGACGACGTGCCGCTGGTGCGTGGGGCTGGCAAGGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGga                                                                                                       <  2:4127974/150‑1 (MQ=255)

                                                aaTGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGga                                                                                                       >  2:3639766/1‑150 (MQ=255)

                                                aaTGAAGGGCTGGGGCCTGGGAGGACCCGGCATTGTTTGTAAACGGTGTGTGAATTGGCTCCCGGCGACGACGTGCCGGTGGTGCCTGGGGCTGGCCATGGCCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGga                                                                                                       <  1:6572669/150‑1 (MQ=255)

                                                aaTCAACTGCAGGGCCCAGGCAGCACCCCCCAATGCATGCAAACCGTGACTCAAATGCCTCCCCCCGACCACCACCCGCTGGTCCCTGGCCCTGCCCAAGGACAGCCCCGCGCAGGTACTGGCCCACGACTTGCCCCCACCGCCCACGga                                                                                                       <  2:7055191/150‑1 (MQ=255)

                                                  tGACGTGCAGGGGCCAGGGAGGCCCCGGCATTGGTTGGAAACCGTGTGTGAAAGGGCTCCCGGCGACGACGTGCCGCGGGTGCCTGGGGCTGGCCATGGCCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGgaga                                                                                                     <  2:7031962/150‑1 (MQ=255)

                                                  tGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGgaga                                                                                                     >  1:5871248/1‑150 (MQ=255)

                                                  tGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGgaga                                                                                                     >  1:6255976/1‑150 (MQ=255)

                                                  tGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGgaga                                                                                                     >  1:5213462/1‑150 (MQ=255)

                                                  tGAAGGGCAGGGGCCTGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGgaga                                                                                                     <  2:216026/150‑1 (MQ=255)

                                                         cAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGCCGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGc                                                                                              <  2:2381467/150‑1 (MQ=255)

                                                            gggCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCAt                                                                                           >  2:693536/1‑150 (MQ=255)

                                                             ggCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATc                                                                                          <  2:4652270/150‑1 (MQ=255)

                                                                 aGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCg                                                                                      >  1:5603802/1‑150 (MQ=255)

                                                                  gggAGGACCCGGCATTGGTTGGAACCCGTGTGTGAACTGGCTCCCGGCGCCGCCGTGCCGGGGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGa                                                                                     <  1:1025766/150‑1 (MQ=255)

                                                                  gggAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGa                                                                                     <  1:6806574/150‑1 (MQ=255)

                                                                       gaCCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCa                                                                                >  1:4790603/1‑150 (MQ=255)

                                                                       gaCCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCa                                                                                >  1:4393039/1‑150 (MQ=255)

                                                                         cccGGAATTGGTTGGAACGGGTGTTTGAACTGGCTCCGGGCGACGACGGGCCGGTGGTGCGTGGGGCTGGCCTTGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCAcc                                                                              <  1:5004080/150‑1 (MQ=255)

                                                                          ccGGCATTGGTTGGCAACCGTGTGGGACAGGGCTCCCTGCGAGGAGGGGCGGCTGGTGCCGGGGGCTGGCCATGGCCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCAccc                                                                             <  1:2184518/150‑1 (MQ=255)

                                                                          ccGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGTGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCAccc                                                                             >  2:808443/1‑150 (MQ=255)

                                                                          ccGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCAccc                                                                             >  2:622462/1‑150 (MQ=255)

                                                                          ccGGAATTGGTTGGAAACGTTTTGTTAATTGGCTCCCGGCGACGACGTGCCGGTGGTGCCTGGGGCGGGCCTTGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCAccc                                                                             <  1:6286701/150‑1 (MQ=255)

                                                                            ggCAATGGTTGGAACCCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCtt                                                                           <  2:1042987/150‑1 (MQ=255)

                                                                               attgtttGTAAACCGTGTGTGATCTGGCGCCCGGCGACGACGTGCGGGTGGGGCGTGGGTCTGGCATTGGTCACCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTAc                                                                        <  1:214026/145‑1 (MQ=255)

                                                                                   gTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCg                                                                    >  2:169818/1‑150 (MQ=255)

                                                                                   gTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCg                                                                    >  1:391920/1‑150 (MQ=255)

                                                                                    ttGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGa                                                                   >  2:3817239/1‑150 (MQ=255)

                                                                                    gtGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGa                                                                   >  2:1431778/2‑150 (MQ=255)

                                                                                     tGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGAc                                                                  <  2:5966798/150‑1 (MQ=255)

                                                                                     tGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCGGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGAc                                                                  <  1:6095202/150‑1 (MQ=255)

                                                                                       gAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCt                                                                >  2:3239690/1‑150 (MQ=255)

                                                                                         aaCCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCtgg                                                              >  2:3487117/1‑150 (MQ=255)

                                                                                          cgggtgtgtGATTTGGCTCCCGGCGACGCCGTGCGGGTGGTGCGTGGGGCGGGCCATGGCCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCtggt                                                             <  1:6923132/147‑1 (MQ=255)

                                                                                          aCCGGGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCtggt                                                             <  2:3872360/150‑1 (MQ=255)

                                                                                           ccGTGTGTGACCTGGCTCCCGGCGACGACGTGCCGCCGGTGCCTGGGGCCGGCCAGGGACAGCCCCGCGCTGGTACTGGCCGACGACGGGCCCCCACCGCCCACCGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCtggtg                                                            <  2:291516/150‑1 (MQ=255)

                                                                                             gtgtgtGAACTGGCTCCCGGCGACGAGGGGCCGCTGGGGCGTGGGGCTGGCCTGGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTggtggt                                                          <  1:6471047/150‑1 (MQ=255)

                                                                                                tgtgAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGaa                                                       >  2:3219494/1‑150 (MQ=255)

                                                                                                   gAAATGGATCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCAGGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCa                                                    <  2:6599518/150‑1 (MQ=255)

                                                                                                   gAAAGGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCa                                                    <  2:6349142/150‑1 (MQ=255)

                                                                                                              cGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAggg                                         >  1:7256968/1‑150 (MQ=255)

                                                                                                              cGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAggg                                         >  2:1898053/1‑150 (MQ=255)

                                                                                                                  gacgacGTGCCGCGGGTGCCTGGGGCGGGCCAGGGCCCGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGa                                     <  1:731890/150‑1 (MQ=255)

                                                                                                                     gccgTGCCGCTGGGGCCTGGGGCTGGCCCTGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCt                                  <  1:3570305/148‑1 (MQ=255)

                                                                                                                     gacgTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCt                                  >  1:1373728/1‑150 (MQ=255)

                                                                                                                        gTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGAt                               >  1:114942/1‑150 (MQ=255)

                                                                                                                            cgcgGGTGCGGGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCg                           <  1:2888447/150‑1 (MQ=255)

                                                                                                                            cGCTGGTGCGTGGGGCTGGCCATGGTCCGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCg                           <  1:1200285/150‑1 (MQ=255)

                                                                                                                            cGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCg                           <  2:6399515/150‑1 (MQ=255)

                                                                                                                             gCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCgg                          >  2:2694577/1‑150 (MQ=255)

                                                                                                                                 gTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTgca                      >  2:4522456/1‑150 (MQ=255)

                                                                                                                                     cTGGGGCTGGCCATGGTCAGCCCCGCACTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGcagcag                  >  1:2980771/1‑150 (MQ=255)

                                                                                                                                        gggCTGGCCTTGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGcgg               <  1:1675450/150‑1 (MQ=255)

                                                                                                                                        gggCTGGCCTTGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGcgg               <  1:5447489/150‑1 (MQ=255)

                                                                                                                                          gCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGcgggc             >  2:4995173/1‑150 (MQ=255)

                                                                                                                                           cTGGCCAGGCCCCGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGcgggtc            <  1:3299384/150‑3 (MQ=255)

                                                                                                                                            tGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGcgggccg           >  1:5411786/1‑150 (MQ=255)

                                                                                                                                            tGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGcgggccg           >  1:1978153/1‑150 (MQ=255)

                                                                                                                                                 aTGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCgg      >  1:838195/1‑150 (MQ=255)

                                                                                                                                                 aTGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCgg      <  2:7126560/150‑1 (MQ=255)

                                                                                                                                                 aTGCTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCgg      <  2:4382482/150‑1 (MQ=255)

                                                                                                                                                     tCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGt  <  2:2505576/150‑1 (MQ=255)

TCAACACTCGGCGGACGCCATCCGCCAAGGCCAATGAGCCAACGGCCGAATGAAGTGCAGGGGCCAGGGAGGACCCGGCAATGGTTGGAAACCGTGTGTGAAATGGCTCCCGGCGACGACGTGCCGCTGGTGCCTGGGGCTGGCCATGGTCAGCCCCGCGCTGGTACTGGCCGACGACTTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGT  >  NC_002947/2698653‑2698951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`