| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,324,153 | T→G | 12.5% | intergenic (‑125/+67) | treSA ← / ← PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,324,153 | 0 | T | G | 12.5% | 748.7 / 7.7 | 280 | intergenic (‑125/+67) | treSA/PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (97/125); new base G (41/2); total (153/127) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.61e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 286 total aligned reads displayed.
CGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATG > NC_002947/3324004‑3324302 | cGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCt < 1:1036830/150‑1 (MQ=255) tATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑a < 1:3395974/150‑1 (MQ=255) aCGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGAt > 1:3460311/1‑150 (MQ=255) gggTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCCCACCCCCACGCCGACCGACCGCAG‑GAAAttt > 1:1510543/1‑150 (MQ=255) gggTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGAttt < 1:514429/150‑1 (MQ=255) gggCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCt < 2:7186757/150‑1 (MQ=255) cTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCa < 1:7221899/150‑1 (MQ=255) tCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGCCATACCGCGG‑AAGATTTGCGCTGccccagg > 2:1550991/1‑147 (MQ=255) cATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCtgtg < 2:3043981/150‑1 (MQ=255) cATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCtgtg < 2:7056200/150‑1 (MQ=255) ttCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCCACGCGGACCAACCGCGG‑AAGCTTTGCGCTGCACCAGTGGGa > 2:6023922/1‑150 (MQ=255) ttCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGa < 2:4711866/150‑1 (MQ=255) cggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGa > 1:1770631‑M1/85‑150 (MQ=255) gtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGc > 2:7376382‑M1/83‑150 (MQ=255) tgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCg > 1:4634132‑M1/82‑150 (MQ=255) tCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCCCTGCACCGGTGGGAGCGGgc > 2:6381062/1‑150 (MQ=255) caattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGa < 1:5893230‑M1/66‑1 (MQ=255) ctctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGgcgc < 1:2504004/150‑1 (MQ=255) ctctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGgcgc < 2:5072622/150‑1 (MQ=255) ctctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGgcgc < 2:5762450/150‑1 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCCGCCCAACCCCGG‑AAGATTTTCGCTGCACCGGGGGGGGCGGgcgcg > 2:54039/1‑150 (MQ=255) ctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGATCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCCAGGCGGCCATAACGCGT‑AAGGATTGGGCTGCACCTGTGGGAGCGGgcgcgc > 2:4075183/1‑150 (MQ=255) tttGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCGTTCCCCCGCCCCCACGCCGGCCTACCGCCGAAAGATTTG‑GCGGCCCCAGTGGGGGCGGGCGCGcc > 1:3793982/1‑150 (MQ=255) ttGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACCTACCGCTG‑AAGATTTGCGCTGCCCCGGGGGGAGCGGGCGCGccc > 2:6703035/1‑150 (MQ=255) gtgtCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCATGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AATATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCcgctc < 1:5413159/150‑3 (MQ=255) gtgtCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGa > 2:1636540/1‑150 (MQ=255) ccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCACTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGa > 2:3516642‑M1/69‑150 (MQ=255) tgtCGGCCCCGGCTCAGGTTATGACGGCGCGGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGaa < 1:4317683/150‑1 (MQ=255) tgtCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGaa < 2:5632053/150‑1 (MQ=255) gtCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGTTGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAag < 2:2808073/150‑1 (MQ=255) tCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAaga < 2:3710601/150‑1 (MQ=255) ggCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTGGCGCGCCCGAAGGCGGGCAGAGCGCGG‑AATTTTTTGGGTGCAGCAGTGGGGGCGGGGGGGGCCGCGAAGAgg > 1:396788/1‑150 (MQ=255) gCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCGCCCACAGGCGGTCATACCGCGG‑AAGTGTTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGCAGAGGc > 2:2561836/1‑150 (MQ=255) gCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGGTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGTCATTCCGCTG‑AAGTTTTGGGCGGCGCCAGTGGGAGCGGGCGCGCCCCCGAAGTGGc > 2:6606306/1‑150 (MQ=255) gTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCaaa < 2:5815473/150‑1 (MQ=255) gACGGCGCTGCGGCGTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAg < 2:4181125/150‑1 (MQ=255) aCGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCGCTCCCACAGGCGGGCAAACCCCTG‑AAGATTTGCGCTGCACCAGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCAGCAAAGGCCgg > 2:2728232/1‑150 (MQ=39) ggCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCCAGGCGGCCATGCCGCGG‑AAGGGTTGCGCGGCACCGGGGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCGGCCAAGGCCGGag > 2:4865302/1‑149 (MQ=255) ggCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGAt > 2:7288444/1‑150 (MQ=255) gcgcTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCGG‑ACGTTTTGCGCGGCACCGGGGGGAGCGGGCGCGCCCGCGCAGCGGCCGGGCCTGCACAGCCTGGATc > 2:6056113/1‑150 (MQ=255) gcTGCGGCCTGAACGTTCGGCTCAAGATGTGTGTGGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACAGACCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAg < 2:6860019/150‑1 (MQ=39) cTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAgc < 1:1143712/150‑1 (MQ=255) tGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCGCCCCCACGCCGACATGCCGCGG‑AAGGTTTGCGGTGCACCAGGGGGAGCGGGCGCGCCCGCGGAGAGGCCGGGCCGGCCAAGGCAGGATCAgcg > 2:1110284/1‑150 (MQ=255) gCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCgg < 2:2172707/150‑1 (MQ=255) cTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGc < 2:4827439/150‑1 (MQ=255) tGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCGTTCCCGCTCCCACAGGCGGACATAACCCTG‑AAGATTTTCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGCAGAGGCCGGGCCAGCAAAGGCACGATAAGCGCCCGGcc > 2:1255244/1‑150 (MQ=38) aaggTTCGGCTCATGTTGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACCGGCGGACATACCGCTG‑AAGTTTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCGGGATCAGCGCCGGGCCGa < 1:2814518/147‑1 (MQ=39) aaCGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCCAGGCCGACATACCGCTG‑CAGGTTTGCGCTGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCCGGCCTGCCAAGGCAGGATCAGCGCCGGGcccc > 2:6459906/1‑148 (MQ=38) aaCGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAGGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGa < 1:3622382/150‑1 (MQ=255) aCGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCGG‑AAGATTTGCGCTGCACCGGTGGGTGCGGGCGCGCCCGCCAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCCGGCCGAc > 2:5917172/1‑150 (MQ=255) gTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCGCCCACACGCCGACAAACCCCGG‑AAGATTTTCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGCACACGCCCGGCCAGCCAAGGCCCGATAACCGCCCGGcccgcaa > 2:187509/1‑145 (MQ=255) ttCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCGCTCCCACACGCGGACATACCGCGG‑AAGATTTGCGCTGCACCTGTGGGTGCGGGCGCGCCCGCGAAGACGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAAc > 2:6476828/1‑150 (MQ=255) cTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCCCGCCCACAGGCGGACCTACCGCGG‑AAGATTTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGCAGAGGCCGGGCCAGCAAAGGCAGGATCAGCGCCGGGCCGACAActgctg > 2:4434239/1‑150 (MQ=255) tCAAGATGGGTGTTGGTTTCTTCGCGGGCTGGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACtgctgc < 2:2014209/150‑1 (MQ=255) gggTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCa < 2:4031202/150‑1 (MQ=255) ttGGTTTCTTCGCGGGCTTTCCCGCTCCCACACGCGGACCAACCCCGG‑AAGATTTGCGCAGCAACAGTGGGAGCGGGCGCGCCCCCGAAGAGGCCGGGCCAGCAAACGCAGGATCACCGCCCGGCCGACAACTCCAGCGGTGCCAGAAAc > 2:3892353/1‑150 (MQ=255) ttGGTTTCTTCGCGGGCTTTCCCCCGCCCACAGGCGGCCAAACCCCGG‑AAGAATTTCGCGGCACCAGTGGGAGAGGGCGCGCCCCCGAACACGCCGGGCCTGCAAAGGCCGGATCAGCGGCCGGCCCACAAAAGCTGCGGTGCCACAAAc > 2:3295201/1‑150 (MQ=255) ggTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACtgctgc < 1:5973013/136‑1 (MQ=255) gTTTCTGCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACGTGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGca < 1:3993643/150‑1 (MQ=255) ttcttcGGGGGCGTGCCCGCTCCCACTGGCGGACATACCGCTT‑AAGATTTGCGCGGCACGTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGcatc < 1:4737937/150‑1 (MQ=255) gtgggGGGCTGGCCCGCTCCCACCGGGGGACATACCGGTG‑ATTTTTTGCGGTGCACGTGGGGGTGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg > 1:950368‑M1/6‑150 (MQ=255) TTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg > 2:3196742‑M1/1‑150 (MQ=255) gaGCGGGCAAGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATgg < 1:3232859‑M1/148‑1 (MQ=255) ggGGGGTTGCCCGCTCCCACTGGGGTACATACCGCTG‑AAGTTTTGCGCTGCACGTGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 1:1405535‑M1/3‑150 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGTGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 2:5579777‑M1/1‑150 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 2:6921192‑M1/1‑150 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 2:6236810‑M1/1‑150 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 2:838143‑M1/150‑1 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 2:4538862‑M1/1‑150 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 2:5257020‑M1/150‑1 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 1:2423937‑M1/1‑150 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGCGCCGACAACTGCTGCGGTGCCAGAAACGCATCAAGGaa < 1:4147791‑M1/150‑1 (MQ=255) GCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCAGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCAGCAAAGGCAGGATCACCGCCCGGCCGACAAAAGCTGCGGTGCCAGAAACGCAACAAGGaa < 1:6218712‑M1/150‑1 (MQ=255) cgccccccccGCACCCACACCCGCACATACCGCTG‑AAGATTTCCGCGCCACCTCTGGCAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGt < 2:1463222/143‑1 (MQ=255) GCTTGCCCGCTCCCACAGGTGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTaa > 2:3448470‑M1/1‑150 (MQ=255) ttGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAtt < 2:1265366/150‑1 (MQ=255) gtGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAtt < 2:2586314/149‑1 (MQ=255) ggCCCGCGCCCACCGGCGGACACACCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTg < 1:5764139/149‑1 (MQ=255) cccGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAATgcg > 2:1034962/1‑150 (MQ=255) ccGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgcgc > 1:6418509/1‑150 (MQ=255) ccGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgcgc > 2:2973373/1‑150 (MQ=255) gCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCAc > 2:33863/1‑150 (MQ=255) tCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCg > 1:4450946/1‑150 (MQ=255) cccACTGGCGGACATACCGCTT‑AATTTTGGCGCTGCACCTGTGGGCGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGc < 1:204633/150‑1 (MQ=255) ccACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGcc > 1:6746834/1‑150 (MQ=255) cacaGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCt > 1:591870/1‑150 (MQ=255) cacaGCCGCACAAACCCCTC‑AAGATTGGCGCCCCACCTGTGGCAGCGGGCGCGCCCGCCAAGAGGCCGGGCCCGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCt < 1:646001/150‑1 (MQ=255) ggCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCAt < 2:929986/150‑1 (MQ=255) gCGGACATACCGCTG‑ATGATTTGCGCGGCACCTGTGGGAGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATc < 1:4069036/150‑1 (MQ=255) cATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCgg > 2:5238918/1‑150 (MQ=255) cATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCgg < 2:5019577/150‑1 (MQ=255) tACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGc > 1:4683084/1‑150 (MQ=255) aCCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCt > 1:6986549/1‑150 (MQ=255) aCCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCt < 2:6415147/150‑1 (MQ=255) cGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGa < 1:2973373/150‑1 (MQ=255) cGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGa > 2:2488567/1‑150 (MQ=255) cTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAAt > 2:6769154/1‑150 (MQ=255) tG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg < 2:6290192/112‑1 (MQ=255) tG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATg > 1:2246448/1‑150 (MQ=255) tG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCAGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg > 1:6290192/1‑112 (MQ=255) | CGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATG > NC_002947/3324004‑3324302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |