| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,324,158 | A→T | 7.8% | intergenic (‑130/+62) | treSA ← / ← PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,324,158 | 0 | A | T | 7.8% | 753.6 / 8.8 | 282 | intergenic (‑130/+62) | treSA/PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (132/116); new base T (10/12); total (154/128) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 285 total aligned reads displayed.
GACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGT > NC_002947/3324009‑3324307 | gACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGa > 2:2504004/1‑150 (MQ=255) aCGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGAt > 1:3460311/1‑150 (MQ=255) gggTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTTCCCCCGCCCAA‑AGGCGGACAAAACGCAG‑AAGAttt > 1:5663205/1‑150 (MQ=255) gggTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTTCCCCCACCCCC‑ACGCCGACCGACCGCAG‑GAAAttt > 1:1510543/1‑150 (MQ=255) gggCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCt < 2:2840472/150‑1 (MQ=255) gggCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCt < 2:7186757/150‑1 (MQ=255) cTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCGCCCAC‑ACGCGGACAGACCGCGG‑AAGGTTTGCGCTGCa > 2:1647427/1‑150 (MQ=255) tCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCtgt < 2:3460506/150‑1 (MQ=255) tCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCtgt < 1:6212173/150‑1 (MQ=255) cATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGTTGCACCtgtg < 1:4723383/150‑1 (MQ=255) cATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCtgtg < 2:7056200/150‑1 (MQ=255) tttCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACAAACCGCTG‑AAGATTTGCGCAGCACCAGTggg > 2:2329607/1‑150 (MQ=255) ttCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCCC‑ACGCGGACCAACCGCGG‑AAGCTTTGCGCTGCACCAGTGGGa > 2:6023922/1‑150 (MQ=255) cggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGa > 1:1770631‑M1/85‑150 (MQ=255) tCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAg < 1:3090055/150‑1 (MQ=255) gtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGc > 2:7376382‑M1/83‑150 (MQ=255) tgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCg > 1:987212‑M1/82‑150 (MQ=255) tCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAA‑ACGCCGCCATACCGCTG‑TAGTGTTGCGGGGCACGGGTGGGTGCgggg > 2:1143712/1‑149 (MQ=255) ccTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTTCGCGGCACCGGTGGGAGCGGgcg > 2:6227261/1‑150 (MQ=255) caattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggccTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGa > 2:5893230‑M1/78‑143 (MQ=255) ctctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGgcgc < 2:5762450/150‑1 (MQ=255) ctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCGG‑AAGGTTTGCGCTGCACCAGTGGGAGCGGgcgcgc > 2:4075163/1‑150 (MQ=255) tttGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGG‑TTTCCCCCGCCCACAACCCGCACA‑ACCGCAG‑AAAATATAAGCTGCACCAGAGGGAGCagggcccac > 1:6372052/1‑144 (MQ=255) tttGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑GTTCCCCCGCCCCC‑ACGCCGGCCTACCGCCGAAAGATTTG‑GCGGCCCCAGTGGGGGCGGGCGCGcc > 1:3793982/1‑150 (MQ=255) ttGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACCTACCGCTG‑AAGATTTGCGCTGCCCCGGGGGGAGCGGGCGCGccc > 2:6703035/1‑150 (MQ=255) gCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑GTGCCCGCGCCCCC‑AGGCGGCCATACCGCGG‑CAGAGGTGCGCGGCCCCGGGGGGCGCGGGCGCGCCcgc > 2:6437670/1‑150 (MQ=255) gtgtCGGCACCGGCTCTGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑CGGCGGACATACCGCTG‑AATATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGa < 1:6443797/150‑1 (MQ=255) tgtCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGaa < 2:5632053/150‑1 (MQ=255) tCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAaga < 2:3710601/150‑1 (MQ=255) ggCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTTGGCGCGCCCGA‑AGGCGGGCAGAGCGCGG‑AATTTTTTGGGTGCAGCAGTGGGGGCGGGGGGGGCCGCGAAGAgg > 1:396788/1‑150 (MQ=255) gCACGGGCTCTGTTTTTGCGGGCGCTGGGGCCTGAAGTTTCGGCTCAAGTTGGGTTTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGTACATACCGCTT‑ATTTTTTGCGCTGCACGTGGGGGAGGGGGCGCGCCCGCGAAGAGGc < 1:4470950/150‑1 (MQ=255) gCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGc < 1:2967367/150‑1 (MQ=255) gCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCGCCCAC‑AGGCGGACATACCGCAG‑AAGATTTGCGCTGCACCAGTGGGAGCGGGCGCGCCCGCGCAGAGGc > 2:2562194/1‑150 (MQ=255) gCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGGTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGTCATTCCGCTG‑AAGTTTTGGGCGGCGCCAGTGGGAGCGGGCGCGCCCCCGAAGTGGc > 2:6606306/1‑150 (MQ=255) cACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCCCTCCCCC‑CGGCGGACATACCGCGG‑AAGATTTGCGCTGCACCAGTGGGCGCGGGCGCGCCCGCGAACAGGcc > 2:2668612/1‑150 (MQ=255) ccGGCTCTGGTTTTGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTTTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCGG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg < 2:6945993/150‑1 (MQ=255) ccGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg < 2:4677692/150‑1 (MQ=255) ttttGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGCTGGGTGTTGGTTTCTTCGCGGGC‑TGGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAg < 1:4285063/147‑1 (MQ=255) aTGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCGTTGCCC‑CGCCCAC‑ACGCGGCCCAAACGCGG‑AAGAATTGCGCTGCACCTGGGGGCGCGGGCGCGCCCCCCCCGAGGCCCGGCCCGCCAAGGc > 1:4408716/1‑150 (MQ=255) gACGGCGCTGCGGCGTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAg < 2:4181125/150‑1 (MQ=255) ggCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCCC‑AGGCGGCCATGCCGCGG‑AAGGGTTGCGCGGCACCGGGGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCGGCCAAGGCCGGag > 2:4865302/1‑149 (MQ=255) ggCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGAt > 2:7288444/1‑150 (MQ=255) gcgcTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCGG‑ACGTTTTGCGCGGCACCGGGGGGAGCGGGCGCGCCCGCGCAGCGGCCGGGCCTGCACAGCCTGGATc > 2:6056113/1‑150 (MQ=255) gcTGCGGCCTGAACGTTCGGCTCAAGATGTGTGTGGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACAGACCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAg < 2:6860019/150‑1 (MQ=39) cTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAgc < 1:1143712/150‑1 (MQ=255) cTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGc < 2:4827439/150‑1 (MQ=255) tGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑GTTCCCGCTCCCAC‑AGGCGGACATAACCCTG‑AAGATTTTCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGCAGAGGCCGGGCCAGCAAAGGCACGATAAGCGCCCGGcc > 2:1255244/1‑150 (MQ=38) acggTTCGGCTCATGTTGGTTGTGGTTTTGTGGGGGGGG‑GGGCCCGCGCCCCC‑CGGGGGACACCCGGCTT‑AATTTTTGCGCGGCCCGTGGGGGCGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGa < 1:709152/147‑1 (MQ=255) aaCGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAGGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGa < 1:3622382/150‑1 (MQ=255) tCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑GTGCCCGCGCCCAC‑AGGCGGGCATAACGCGG‑AAGATTTTGGCTGCACCTGGGGGTGCGGGCGCGCCCGCGGAGAGGGCCGGCCGGGCAAGGCAGGCTGAGCGCCCGGCCCGCAAca > 2:2068722/1‑149 (MQ=255) cGGCTCACGTGGGGTGTTGGTTTCTGCGCGGGG‑TGCCCCGCCCCCAC‑TGGCGGACTCCCCGCTG‑ACGTTTGGCGCGGCACGGGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAActg < 1:67004/150‑1 (MQ=255) cTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCCCGCCCAC‑AGGCGGACCTACCGCGG‑AAGATTTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGCAGAGGCCGGGCCAGCAAAGGCAGGATCAGCGCCGGGCCGACAActgctg > 2:4434239/1‑150 (MQ=255) tCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TGGCCCGCTCCCAC‑CGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACtgctgc < 2:5931672/150‑1 (MQ=255) aGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCACCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGt < 1:5935506/150‑1 (MQ=255) aTGGGTGTTGGTTTCTTCGCGGGC‑GTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGc < 1:2410227/150‑1 (MQ=255) gggTGTTGGTTTCTTGGGGGGC‑TTGCCCGCCCCCAC‑TGGGGGAAATCCCGCTT‑AATTTTGGCGCTCCCCGTGGGGGCGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCa < 1:1317728/150‑1 (MQ=255) gggTGTTGGTTTCTTCGCGGGG‑TTGCCCGCTCCCCC‑AGGCGGACATACCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCa < 2:45041/150‑1 (MQ=255) gggTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCa < 2:4031192/150‑1 (MQ=255) gtTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGaaa < 2:3059984/150‑1 (MQ=255) ttGGTTTCTTCGCGGGC‑TTTCCCCCGCCCAC‑AGGCGGCCAAACCCCGG‑AAGAATTTCGCGGCACCAGTGGGAGAGGGCGCGCCCCCGAACACGCCGGGCCTGCAAAGGCCGGATCAGCGGCCGGCCCACAAAAGCTGCGGTGCCACAAAc > 2:3295201/1‑150 (MQ=255) ttGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCGG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCACGATCACCGCCCGGCCGACAACAGCAGCGGGGCCACAAAc > 2:5292934/1‑150 (MQ=38) ttGGTTTCTTCGCGGGC‑TTGCCCGCGCCCAC‑AGGCGGACCTTCCCCGG‑AAGCTTTTCGCTGCACCAGGGGGTGCGGGCCGGCCCCCGCAGAGGCCGGGCCAGCAAAGGCAGGATCACCGCCCGGCCCACAACAGCAGCGGTGCCCGAAAc > 2:3244130/1‑150 (MQ=255) gTTTCTGCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACGTGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGca < 1:3993643/150‑1 (MQ=255) TCTTCGCGGGC‑TTGCCCGCTCCCCC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGcatca > 2:6473754‑M1/1‑150 (MQ=255) ggaGCGGGC‑AAGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg < 2:2982746‑M1/147‑1 (MQ=255) gCGCGGGC‑TTGCCCGCTCCCAC‑AGGGGGACATACCGCTT‑AATATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATgg > 1:5810136‑M1/2‑150 (MQ=255) GCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGTGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 2:5579777‑M1/1‑150 (MQ=255) GCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 2:838143‑M1/150‑1 (MQ=255) GCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGGGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 2:5256990‑M1/150‑1 (MQ=255) ttGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAtt < 2:1265366/150‑1 (MQ=255) gCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgc > 2:635505/1‑150 (MQ=255) gCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgc < 1:7288444/150‑1 (MQ=255) cccGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGACGTAATTgcg > 2:1621515/1‑150 (MQ=255) cccGCGCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgcg < 1:5069526/150‑1 (MQ=255) ccGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACaa > 2:3402916/1‑110 (MQ=255) cGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGAGCCAGAAACGCATCATGGAAGTAATTGCGCa > 1:2490637/1‑150 (MQ=255) gCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAaga < 1:2781265/68‑1 (MQ=255) gCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAaga > 2:2781265/1‑68 (MQ=255) cccAC‑TGGCGGACATACCGCTT‑AATTTTGGCGCTGCACCTGTGGGCGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGc < 1:204633/150‑1 (MQ=255) cac‑aGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCt > 2:191506/1‑150 (MQ=255) cac‑aGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCt > 1:591837/1‑150 (MQ=255) ac‑aGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTg > 1:4052922/1‑150 (MQ=255) ac‑aGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCAGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGGGCACCGCCTg > 1:337136/1‑150 (MQ=255) ctggCGTAAATACCGCTT‑ATTTTTTGCGCGGCACGTGGGGGAGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGc < 1:54039/148‑1 (MQ=255) ggCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCAt < 2:929986/150‑1 (MQ=255) gCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCAtg > 2:1070787/1‑149 (MQ=255) gACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGcc > 1:4668276/1‑150 (MQ=255) cATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCgg > 2:5238918/1‑150 (MQ=255) cATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCgg < 2:5019577/150‑1 (MQ=255) aCCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCt > 1:4074229/1‑150 (MQ=255) aCCGCTG‑AAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCt < 2:6415147/150‑1 (MQ=255) gCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGaa < 2:1510543/150‑1 (MQ=255) cTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAAt > 2:6769154/1‑150 (MQ=255) tG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg < 2:6290159/112‑1 (MQ=255) tG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg > 1:6290159/1‑112 (MQ=255) tG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATg > 1:2246448/1‑150 (MQ=255) g‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGc < 1:6492529/150‑1 (MQ=255) g‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGc < 2:3943458/150‑1 (MQ=255) taaGAATTGCGCAGAACCTGTGGGAGAGGGCGCGCCCGCGAAGAGGCCGGGCCTTCAAAGGCAGGATCAGCGCCGGGCCGACTACTGCTGCGGTGCCAGAAACGGCTCATGGCAGTAAGTGCGCACCGCCTGCAGCGCCGGGCTgtctgg > 2:3877947/2‑145 (MQ=255) aTTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGt > 2:5143160/1‑150 (MQ=255) | GACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGC‑TTGCCCGCTCCCAC‑AGGCGGACATACCGCTG‑AAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGT > NC_002947/3324009‑3324307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |