| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,952,942 | A→C | 7.8% | C34G (TGT→GGT) | PP_3483 ← | type II secretion system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,952,942 | 0 | A | C | 7.8% | 722.9 / 4.5 | 249 | C34G (TGT→GGT) | PP_3483 | type II secretion system protein |
| Reads supporting (aligned to +/- strand): ref base A (110/107); new base C (13/12); total (125/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 271 total aligned reads displayed.
GTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGT > NC_002947/3952793‑3953091 | gtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca < 2:1704578/150‑1 (MQ=255)gtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca < 2:5475681/150‑1 (MQ=255) gggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGt < 2:3103988/150‑1 (MQ=255) ggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGt > 2:7440832‑M1/111‑150 (MQ=255) gtgtCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt < 1:1187974/150‑1 (MQ=255) gtgtCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt < 1:6942678/150‑1 (MQ=255) gtgtCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt < 2:1870181/150‑1 (MQ=255) tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACCGGGCTGTggg > 1:1717720/1‑150 (MQ=255) tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTggg > 2:3656581/1‑150 (MQ=255) ggccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCa < 1:3013887/150‑1 (MQ=255) ggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATAc > 2:4649714‑M1/96‑150 (MQ=255) ggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACAt < 1:3714625/150‑1 (MQ=255) ttCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtg > 2:5912493/1‑150 (MQ=255) ccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgt > 1:611573‑M1/89‑150 (MQ=255) ccAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgtg < 1:662688/150‑1 (MQ=255) ccAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgtg < 1:1670745/150‑1 (MQ=255) cagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgtg > 1:5311516‑M1/88‑150 (MQ=255) cagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgtg > 2:7309374‑M1/88‑150 (MQ=255) cagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgtg > 1:1169560‑M1/88‑150 (MQ=255) agcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTgg > 1:4470519‑M1/87‑150 (MQ=255) gcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTggg > 2:3857439‑M1/86‑150 (MQ=255) aGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCGGTggg > 2:2920384/1‑150 (MQ=255) ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGa < 1:1880851/150‑1 (MQ=255) ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGGGGGCT‑GCATACATCCGGTGGGa > 2:5176008/1‑150 (MQ=255) cctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGa > 2:4249319‑M1/85‑150 (MQ=255) cctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACACGTCTGTGGGCT‑GCATACATCCTGTGGGa > 2:390397‑M1/85‑150 (MQ=255) gCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca < 1:2205042/120‑1 (MQ=255) gCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCACCCACAGGTACAGAACAGGTGTGTGGGCT‑GCGTACATACTGTGGGAg > 1:3118924/1‑150 (MQ=255) gCAGTCAAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAg < 1:1038720/150‑1 (MQ=255) cAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGc < 2:4065876/150‑1 (MQ=255) cAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGc < 1:811270/150‑1 (MQ=255) gTCGAGCAGGCGCTCGTCTGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg < 1:7337413/150‑1 (MQ=255) gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg < 2:4332974/150‑1 (MQ=255) gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg < 2:5011481/150‑1 (MQ=255) gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAAATTTTGCTGGGTACTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg < 1:1524793/150‑1 (MQ=255) cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg > 1:1578888‑M1/81‑150 (MQ=255) cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg > 1:6249095‑M1/81‑150 (MQ=255) cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg > 1:1402678‑M1/81‑150 (MQ=255) cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg > 1:6899194‑M1/81‑150 (MQ=255) tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCggg < 1:3283784/150‑1 (MQ=255) tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGGGGGCT‑GCATACATCCTGTGGGAGCggg > 2:6148561/1‑150 (MQ=255) gacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCggg > 1:5953477‑M1/80‑150 (MQ=255) gAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACCGGTCTGGGGGCT‑GCATACATCCGGTGGGAGCGGGCa > 1:2977036/1‑150 (MQ=255) ccctgagcggagtcgcaggccatgccagacgcattcgatgcaaccccggaatcggcaaagcctgcaccgccgTCTTCGCGGGCAGGCCCGCTCCCACCGGTCCATCACCGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGccc > 1:111495‑M1/73‑150 (MQ=255) ccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGccc > 1:3922426‑M1/73‑150 (MQ=255) tCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCCCAGGTCCATCACCGGGCAGTGGGCG‑GCAAACAACCGGGGGGAGCGGGCGGGCCCCCGaa > 1:7140951/1‑150 (MQ=255) ggccggggCTTGCAGCCGGGCCTGGGCCTGGTGGGCGCGGGGGTCGGGGGAAATTTTTGCTGGGTTCTTCGCGGGCAGGCCCGCGCCCACCGGTCCATCCCCGGTCGGTGGGCT‑GCATACCTCGGGTGGGAGCGGGCATGCCCGCGAAGa < 2:7140951/144‑1 (MQ=255) tCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCCTGCCCGCgacgac > 2:6591068/1‑150 (MQ=255) tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTCGGCGGAAATGTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCCGGCCCGCGACGACGGCg > 2:6972542/1‑150 (MQ=39) tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTTCATCCCAGGTCTGTGGGCT‑GCGTAAATACAGTGGGGTCGGGGCTGCCCGCGCAGACGGCg > 1:5644058/1‑150 (MQ=255) tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATa < 2:5739265/114‑1 (MQ=255) tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGGCg > 2:785323/1‑150 (MQ=255) ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgt < 2:399609/118‑1 (MQ=255) ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAGGTACATCACAGGTCTGTGGGCTGGCTTAC‑TCCTGGGGGAGCGGGCCGGCCCGGGGCGACGGCGGTgg > 1:5839170/1‑149 (MQ=255) aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGc > 2:1240478/1‑150 (MQ=255) aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCGGTGGGCT‑GCATACAACCGGTGGGAGCGGGCCTGCCCGCGAAGACGACGGTGCAGGc > 1:1541698/1‑150 (MQ=39) gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTGCGTCCCCGGTCTGTGGGCT‑GCATACAGCCGGGGGGAGCGGGCCTGCCCGCGCCGCCGACGGTGCAGGCtggg > 1:7417370/1‑147 (MQ=255) gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATACCAGGTCGGTGGGCA‑GCCTACATCCGGTGGGGGCGGGCGTGGCCGCGCCGGCGGCCGTGCAGGcggtg > 1:6553958/1‑146 (MQ=255) ggCGTGGGCCTGGCGGTCGGGGGTGTAGGCGTAAATTTTTGCGGGGTTCTTGGCGGGCTGGCCCGCTCCCACCGGTACATCACCGGTCTGGGGGCG‑GAATACACCGTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGc < 2:1950597/150‑1 (MQ=255) cTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCGGTGGGCT‑GCTTACATCGAGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCGGTGCAgc > 2:3741971/1‑149 (MQ=255) cTGGGACTGGCGGGCGCGGGGGTCGGCGCATTTTTGTGCTGGGTTCTTCGCGGCCCGGCCCGCCCCCCCGGGTACAGCACCGGTGGGTGGGCT‑GCATACATCCGGGGGGAGGGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGa < 2:298231/150‑1 (MQ=255) tGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCCTGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGAt > 2:467454/1‑150 (MQ=255) ttcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCggg > 1:5628120‑M1/40‑110 (MQ=255) ttcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCggg < 2:5628120‑M1/71‑1 (MQ=255) cctggaggCCGCGGGGGTCGGGGCAAATTTTTGCGGGGTTCTGCGCGGGCAGGCCCGCTCCCACTGGTACATCACCGGTCGGTGGGCG‑GCATCCAGCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg < 2:5229401/147‑1 (MQ=255) ggaggTCGCGGGGGTAGGCGGAACTTTTGGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg < 2:6785522/150‑1 (MQ=255) gggtttggCTGAATTTTTTGCTGGGTTGTTGGCGGGCAGGCCCGCTCCCACTGTTACCTCACCGGTGTGTGGGCT‑TAATACATCCTGGGGGTGGGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa < 2:3317760/144‑1 (MQ=255) gggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg < 1:2517240/95‑1 (MQ=255) gggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCgg > 2:2517240/1‑95 (MQ=255) ggAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCCCAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTgg > 2:4838514/1‑150 (MQ=255) ggAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATAAAGTGGGAGCGGGCATGCCCCCGAACACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTgg > 2:226049/1‑150 (MQ=39) ttttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACAACACAGGTCGGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc > 2:2186718/1‑150 (MQ=255) tGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCtgtg < 2:1597563/68‑1 (MQ=255) gcttGCCCGCTCCCACTGGTACATCCCTGGTCTGTGGGCT‑GCATACATCCGTTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgc < 2:3316956/147‑1 (MQ=255) GCAGGCCCGCTCCCCCAGGTCCACCACCGGTCTGTGGGCT‑GCATCCATCCTGGGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgc > 2:865406‑M1/1‑150 (MQ=255) CCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGTATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg < 1:2723741‑M1/150‑1 (MQ=255) CCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg < 1:4008224‑M1/150‑1 (MQ=255) CCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg < 1:2581608‑M1/150‑1 (MQ=255) CGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGc < 1:6061146‑M1/150‑1 (MQ=255) CGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGc < 1:493986‑M1/150‑1 (MQ=255) GCTCCCACGGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCa < 2:4481730‑M1/150‑1 (MQ=255) TCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAgg < 2:5754571‑M1/150‑1 (MQ=255) TCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAgg < 1:6715977‑M1/150‑1 (MQ=255) CCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGt > 2:1170100‑M1/1‑67 (MQ=255) CCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct < 1:5488561‑M1/150‑1 (MQ=255) CACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctg < 2:3564410‑M1/150‑1 (MQ=255) cccGGTACATCGCGGGTCTGTGGTAG‑GCATACCTCCTGTGGGCGCGGGAATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg > 1:3656480‑M1/4‑150 (MQ=255) GTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCCGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctg < 1:414256‑M1/145‑1 (MQ=255) aCAGCACCGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGc < 2:5947185/150‑1 (MQ=255) aTCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCa > 1:3179884/1‑150 (MQ=255) aTCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCa > 2:2779510/1‑150 (MQ=255) tCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGtt < 2:1453544/84‑1 (MQ=255) tCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAg > 1:5366366/1‑150 (MQ=255) tCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAg > 1:6977060/1‑150 (MQ=255) caccGGTCGGTGGGCT‑GCAGCCATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgg < 2:6220456/150‑1 (MQ=255) cacaGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgg > 1:3452164/1‑150 (MQ=255) cacaGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgg > 1:1252079/1‑150 (MQ=255) cacaGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgg > 1:3451801/1‑150 (MQ=255) caGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgggg > 2:4788367/1‑150 (MQ=255) aGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGt > 1:2385279/1‑150 (MQ=255) | GTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCT‑GCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGT > NC_002947/3952793‑3953091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |