Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,206,9670AC22.8% 1006.5 / 28.3 406Q139P (CAG→CCG) xcpWtype II secretion pathway protein XcpW
Reads supporting (aligned to +/- strand):  ref base A (245/59);  new base C (1/89);  total (246/160)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 410 total aligned reads displayed.

TTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGCCCCCTATGTCTGCAC  >  NC_002947/1206819‑1207114
                                                                                                                                                    |                                                                                                                                                   
   cTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAgcg                                                                                                                                                  >  1:105537/1‑149 (MQ=255)
     gtgGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGcgcg                                                                                                                                                >  1:644334/1‑149 (MQ=255)
     gtgGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGcgcg                                                                                                                                                >  1:5153239/1‑149 (MQ=255)
     gtgGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGcgcg                                                                                                                                                >  1:3823740/1‑149 (MQ=255)
       gggTCGCCAGCACCGGCCTGCCGGCAGCCGCAGGTGGCTCGCGCCCGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCCGGAAAGCTCGGCGGACCTGTACGCCGCTGGCTCCCCGCGCTGGGTACAGCGCGaa                                                                                                                                              <  2:198421/149‑1 (MQ=255)
       gggTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGaa                                                                                                                                              <  1:204031/149‑1 (MQ=255)
       gggTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGaa                                                                                                                                              <  1:4688915/149‑1 (MQ=255)
         gTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGACCg                                                                                                                                            >  2:4794926/1‑149 (MQ=255)
         gTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACg                                                                                                                                            >  2:7630771/1‑149 (MQ=255)
         gTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACg                                                                                                                                            >  2:3799265/1‑149 (MQ=255)
          tCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGa                                                                                                                                           >  1:7136151/1‑149 (MQ=255)
           cGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGAc                                                                                                                                          >  2:6098457/1‑149 (MQ=255)
              cAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCg                                                                                                                                       >  2:8221112/1‑149 (MQ=255)
              cAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCg                                                                                                                                       >  1:7243574/1‑149 (MQ=255)
                  aCCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGAccc                                                                                                                                   >  2:5065100/1‑148 (MQ=255)
                  aCCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCa                                                                                                                                   >  2:3724895/1‑149 (MQ=255)
                      gCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTc                                                                                                                               >  2:2145566/1‑149 (MQ=255)
                         tGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAgc                                                                                                                            >  1:8215898/1‑149 (MQ=255)
                          gCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAgcg                                                                                                                           >  2:1612549/1‑149 (MQ=255)
                            cGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGcc                                                                                                                         >  1:2540964/1‑149 (MQ=255)
                              gCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCAt                                                                                                                       >  2:3120082/1‑149 (MQ=255)
                                 gCCGATGGTGGCGCGCGCCTGCACCGCCAGCGCGGGCGGTTCGCGGCCCGGGACAACCGCCTGCTGCTGTAAAGCTCGGCGGACGTTTCCGCGGCTGGCGCCCCGGGGTGTGTACAGCGCCAACGACTCGACCAGGTCAGCGCCATGaa                                                                                                                    <  2:7855653/149‑1 (MQ=255)
                                 gCCGACGGTGGCTCGCGCCTGCACCGCCAGCGCCTGCGTTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGaa                                                                                                                    <  2:6655968/149‑1 (MQ=255)
                                   cGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACg                                                                                                                  >  1:8656469/1‑149 (MQ=255)
                                      aGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACgttc                                                                                                               >  2:2612570/1‑149 (MQ=255)
                                       gggggCGCGCGCCTGCACCCCCTGCGCCTGGGGTTCGTGGCCGGCGAGCACCGCCTGCTGGTGTAACGCGGGGCGGACCTTTACGCGGCTGGCGCCCCGGGCTGGGTACCGCGCCAACGACTCGACCAGGTCAGCGCCATGAACgttct                                                                                                              <  2:543163/146‑1 (MQ=255)
                                        gTGGCTCGCGCCTTCAACGCCAGCGCCTGGGGTTGGCGGCCCGCGTGCACCGCCGGCGGTTGGAATGCTCGGCGGACCTGGACGCCGCTGGCGCCCCGCGGGGGGTACCGCGCTAACGACTCGACCAGGTCAGCGCCATGAACgttctg                                                                                                             <  2:7447197/149‑1 (MQ=255)
                                          ggCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACgttctgtt                                                                                                           >  1:1420771/1‑149 (MQ=255)
                                               gcgcCGGCACCGCCCGCGCCGGGGGTGGGGGGCCGGGGTGCACGGCCTGCTGGTGGACGGGGGGGGGGCCGTGTCCGCGGGGGGCGCCCGGGGGGGGGTACCGCGCCCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTAcc                                                                                                      <  2:5561135/149‑1 (MQ=255)
                                                cgcCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCa                                                                                                     >  2:5633281/1‑149 (MQ=255)
                                                     gCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGggcg                                                                                                >  1:8364621/1‑149 (MQ=255)
                                                      cAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGggcgg                                                                                               >  1:3485920/1‑149 (MQ=255)
                                                       aaCCCCAGCGCGTGCGTTTCGAGCCCCGACACAAACGCCTCCTGCTTTAAAGCCCGGCGCACCTGTACCCCGCTGGCGCCCCGCGCTGTTAAAAGCGCAAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGggcggc                                                                                              <  2:8519309/149‑1 (MQ=255)
                                                        aCGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGcc                                                                                             >  1:6368906/1‑149 (MQ=255)
                                                           ccAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCgct                                                                                          >  1:5955187/1‑149 (MQ=255)
                                                           ccAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCgct                                                                                          >  2:780883/1‑149 (MQ=255)
                                                             aGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCgctgg                                                                                        >  1:2388673/1‑149 (MQ=255)
                                                              gcgcGTGCGGTTCGCGGCCCGCGAGCACCGCCTGCTGGTGTAACGCTGGGCGGACCGGTCCGCCGCTGGCGCCCCGCGGTGGTAACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCgctggc                                                                                       <  2:4086465/149‑1 (MQ=255)
                                                              gcgcCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAATGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCgctggc                                                                                       >  1:4493798/1‑149 (MQ=255)
                                                                   tGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGctggcc                                                                                  >  1:5231076/1‑149 (MQ=255)
                                                                        ttCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCtggcctggcc                                                                             >  2:5745924/1‑149 (MQ=255)
                                                                         tCGTGGCCCGCGCGCACCGCTTGGTGGTGTAAAGCCGGGGGTACCTGTAGGCCGGGGGGCCCCCGCGGTGGTTACAGCGGTACCGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTggcctgtcct                                                                            <  2:8910868/149‑1 (MQ=255)
                                                                           gAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTc                                                                          >  1:1281159/1‑149 (MQ=255)
                                                                           gAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTc                                                                          >  1:2648720/1‑149 (MQ=255)
                                                                           gAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTc                                                                          >  1:7864169/1‑149 (MQ=255)
                                                                               cccGCGCGCAACGCCGGCTGCGGGAAAGCTGGGCGGACCTGTCCGCCGCGGGCGCCCCGCGCGGGGTACCGCGCCAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGAc                                                                      <  2:2017843/149‑1 (MQ=255)
                                                                               cccGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGAc                                                                      >  2:3892421/1‑149 (MQ=255)
                                                                                   cgAGCAACGCCGGCGGCTGGAAAGCTCGGCGGACCTGCACGCCGCTGGCGCCCCGCGCGGGGTCCCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCGACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAAc                                                                  <  2:8106655/149‑1 (MQ=255)
                                                                                       cAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGt                                                              >  2:717962/1‑149 (MQ=255)
                                                                                        aaCGCCTGGTGCTGTAAAGCTGGGGGTACGTGTACGCGGGTGGCGCCCCGCGGTGGTTACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTg                                                             <  2:1246894/149‑1 (MQ=255)
                                                                                         aCGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGc                                                            >  2:226014/1‑149 (MQ=255)
                                                                                          cGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCa                                                           >  1:3008879/1‑149 (MQ=255)
                                                                                           gCCTGCTGGTGTAATGCTCGGCTGCCCTGTCGGGGTCGGGCGCCGCGCGGTGTGTAACGCGCCCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGTGCGGCCGCTTGCTGGCCTGGCCTTCTGACCAACCGGTTCAc                                                          <  2:5486843/149‑1 (MQ=255)
                                                                                             ctggtggtgGACTGCTGGGGGGACGTGTACGCGGGGGGCGCCCGGGGGGGGTTACAGGGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCAccc                                                        <  2:4903228/149‑1 (MQ=255)
                                                                                             ctgctgctgGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCAccc                                                        >  2:8003565/1‑149 (MQ=255)
                                                                                              ggctgctgTAAAGCTCGGGGGACCTTTAGGCCGCGGGCGCCCCGCGGTGGGTACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCa                                                       <  2:7491578/148‑1 (MQ=255)
                                                                                                gtggtgGAAAGCTCTGCGGACGTGTACGCGGGTGGCGCCCCGCGGGGGGTACCGCGCGCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAgg                                                     <  2:6820327/145‑1 (MQ=255)
                                                                                                ctgctgGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAgg                                                     >  2:4327790/1‑149 (MQ=255)
                                                                                                    tgGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCGGCGCTGGGTACTGCGTGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCgt                                                 <  1:4360255/149‑1 (MQ=255)
                                                                                                     ggAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGTTACAGTGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCgtg                                                <  1:6061599/149‑1 (MQ=255)
                                                                                                     ggAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCgtg                                                >  2:8179770/1‑149 (MQ=255)
                                                                                                        aaGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGGTGGTTACCGGGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCgtggtg                                             <  1:9067828/149‑1 (MQ=255)
                                                                                                           gtCGGCGGCCCTGTCGGCGGGTGGCGCCCCGCGGGGGTTACAGGGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGc                                          <  1:7516547/148‑1 (MQ=255)
                                                                                                           cTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGc                                          >  1:6898094/1‑149 (MQ=255)
                                                                                                            tgggcggACCTGTCCGCCGCGGGCGCCCCGCGCGGGGTCCCGCGCGCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCg                                         <  2:8300350/147‑1 (MQ=255)
                                                                                                            tCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCg                                         >  1:7652949/1‑149 (MQ=255)
                                                                                                             cggcggACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGt                                        <  2:4985540/149‑1 (MQ=255)
                                                                                                             cggcggACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGt                                        >  1:6619201/1‑149 (MQ=255)
                                                                                                               gcggACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCt                                      >  1:5812823/1‑149 (MQ=255)
                                                                                                                gggACCGGTACGCCGGTGGCGCCCCGGGGTGGGTACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTg                                     <  1:8142082/148‑1 (MQ=255)
                                                                                                                cggACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTg                                     >  1:3902032/1‑149 (MQ=255)
                                                                                                                  gACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGa                                   >  2:653280/1‑149 (MQ=255)
                                                                                                                    cctgaccgccggGGGCGCCCCGCGGTGGGTACCGCGCCAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAAc                                 <  2:6304216/143‑1 (MQ=255)
                                                                                                                    ccTGTCCGCCGGGGGCGCCCCGGGGGGGGTACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAAc                                 <  2:3463803/149‑1 (MQ=255)
                                                                                                                      tGTACGCCGCTGGCGCCCCGCGGGGGGTACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAActg                               <  2:2865129/149‑1 (MQ=255)
                                                                                                                      tGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGGCGTGGTGTGCGTCTGGAActg                               >  2:8850257/1‑149 (MQ=255)
                                                                                                                      agaaCGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAActg                               >  2:7053974/4‑149 (MQ=255)
                                                                                                                         ccgccgcGGGCGCCCCGCGGTGGGAACCGCGCCAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAActgctg                            <  1:7459108/148‑1 (MQ=255)
                                                                                                                         aCGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAActgctg                            >  1:5671186/1‑149 (MQ=255)
                                                                                                                         aCGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAActgctg                            >  1:5016657/1‑149 (MQ=255)
                                                                                                                          cgccgcTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACtgctgc                           >  2:3268816/1‑149 (MQ=255)
                                                                                                                            ccgcTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGt                         >  2:871103/1‑149 (MQ=255)
                                                                                                                            ccgcGGGCGCCCCGCGGTGGTTACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGt                         <  2:7436819/149‑1 (MQ=255)
                                                                                                                              ggggcccccccGCGGTGGGTACCGCCCCCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGa                       <  1:8040529/142‑1 (MQ=255)
                                                                                                                              gcTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTgt                       >  2:5938348/1‑148 (MQ=255)
                                                                                                                                 ggCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATgg                    >  2:1496376/1‑149 (MQ=255)
                                                                                                                                 ggCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATgg                    >  1:3193254/1‑149 (MQ=255)
                                                                                                                                  gcgcCCCGCGGTGGTTACTGGGCTAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGa                   <  2:1763763/149‑1 (MQ=255)
                                                                                                                                  gcgcCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCCACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGa                   >  1:7328800/1‑149 (MQ=255)
                                                                                                                                     ccccGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGcc                >  2:4733023/1‑149 (MQ=255)
                                                                                                                                      cccGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGccc               >  2:1171035/1‑149 (MQ=255)
                                                                                                                                      cccGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGccc               >  2:735941/1‑149 (MQ=255)
                                                                                                                                      cccGCGCTGGGAACCGCGCGCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGccc               <  2:2524070/149‑1 (MQ=255)
                                                                                                                                        cgcgCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGccccc             >  1:5306463/1‑149 (MQ=255)
                                                                                                                                           gcTGGGTACAGCGCGCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGCCCCCTAt          <  2:2384019/149‑1 (MQ=255)
                                                                                                                                            gggggTCCCGCGCCCACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGCCCCCTATg         <  1:8464526/147‑1 (MQ=255)
                                                                                                                                                ttACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGCCTGGAACTGCTGCGTGATGGAGCCCCCTATGTCTg     <  2:644334/148‑1 (MQ=255)
                                                                                                                                                gTACCGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGCCTGGAACTGCTGCGTGATGGAGCCCCCTATGTCTg     <  2:5153239/149‑1 (MQ=255)
                                                                                                                                                 tACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGCCCCCTATGTCTGc    >  1:493386/1‑149 (MQ=255)
                                                                                                                                                 tACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGCCCCCTATGTCTGc    <  1:8291639/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCAGGTCAGCGCCATGAACGTTCTGTTCTACCAGGGCGGCCGCTGGCTGGCCTGGCCTTCTGACCAACCGGTGCACCCAGGTCGTGGTGTGCGTCTGGAACTGCTGCGTGATGGAGCCCCCTATGTCTGCAC  >  NC_002947/1206819‑1207114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑