Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,729,3060TG22.7% 532.1 / 23.5 266intergenic (‑203/+91)PP_5024/opgHamino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
Reads supporting (aligned to +/- strand):  ref base T (79/119);  new base G (41/17);  total (130/136)
Fisher's exact test for biased strand distribution p-value = 4.42e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 275 total aligned reads displayed.

ACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAGCGGC  >  NC_002947/5729158‑5729454
                                                                                                                                                      |                                                                                                                                                     
 cTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTg                                                                                                                                                      <  2:1856611/149‑1 (MQ=255)
 cTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTg                                                                                                                                                      <  1:3376066/149‑1 (MQ=255)
 cTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTg                                                                                                                                                      <  2:7667748/149‑1 (MQ=255)
 cTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCAACAAGGGCATGTGTATCCCTg                                                                                                                                                      >  2:3560179/1‑149 (MQ=255)
 cTGGCCGAAGCGGCGTATCGGCGAGGGATTCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGCAAGTGTATCCCTg                                                                                                                                                      <  2:452051/149‑1 (MQ=255)
  tGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAAACCGCTCCTACAAGGGCATGTTTATACCggg                                                                                                                                                     >  1:5066219/1‑149 (MQ=255)
   ggCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGt                                                                                                                                                    <  2:8614876/149‑1 (MQ=255)
     ccGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTAACCCCGCCAACAAGGGGATGTGTATACCGGGTAg                                                                                                                                                  >  2:1784356/1‑149 (MQ=255)
      cGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAgg                                                                                                                                                 <  1:3895262/149‑1 (MQ=255)
       gAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCAACAAGGGCATGTGTATACCTGGTAGGa                                                                                                                                                >  2:1704130/1‑149 (MQ=255)
       gAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCAACAAGGGCATGTGTATACCAGGTAGGa                                                                                                                                                >  2:1368590/1‑149 (MQ=255)
        aaGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGCCCAGCCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAg                                                                                                                                               <  1:120404/149‑1 (MQ=255)
          gCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGCCAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCg                                                                                                                                             <  1:6103074/149‑1 (MQ=255)
            gtcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCAGGTAGGAGCggg                                                                                                                                           >  2:2165641/1‑149 (MQ=255)
             tcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAACTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGt                                                                                                                                          <  1:8305736/149‑1 (MQ=255)
              cgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTACCCCCGCCAAAAAGGGCACGTGGATGCCGGGGAGGGGCggggt                                                                                                                                         >  1:2419157/1‑147 (MQ=255)
              cgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGtt                                                                                                                                         <  2:4709972/149‑1 (MQ=255)
              cgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGtt                                                                                                                                         <  2:2482322/149‑1 (MQ=255)
              cgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGtt                                                                                                                                         <  1:4466976/149‑1 (MQ=255)
                  tCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGGAACCGCGCCGACAAGGGCATGTGTATCCCTGGGAGGCGCGGGttgaac                                                                                                                                     >  2:3249410/1‑145 (MQ=255)
                      agagGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAAAACGCTCCTACAAGGGGGAGGGTATACCAGGTAGGAGAGGGGTGACCcgcc                                                                                                                                 >  1:5158882/1‑148 (MQ=255)
                      agagGGAAGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAACGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCcgcg                                                                                                                                 >  2:5831211/1‑149 (MQ=255)
                          ggATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGTGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGCATCCCTGGTAGGAGCGGGTTCACCCGCGAaga                                                                                                                             <  2:7340110/149‑1 (MQ=255)
                          ggATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAaga                                                                                                                             <  2:8281617/149‑1 (MQ=255)
                             tGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTACCCGCTCCTACAAGGGCATGTGTATCCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                                          >  2:661041/1‑149 (MQ=255)
                                tAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGGGAACCCCCGCCAAAAAGGGCATGTTTATACCAGGGTGGGGCGGGGTCACCCCCCCAGAGGcccc                                                                                                                       >  1:922569/1‑148 (MQ=255)
                                   cGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAATGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATACCGGGGAGGTGCGGGTTCACCCGCGCAGAGGCCCGGTc                                                                                                                    >  2:4642261/1‑149 (MQ=39)
                                         gcggcCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATgcgc                                                                                                             <  2:9035556/149‑1 (MQ=255)
                                            gcCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAAACCCCTCCAACAAGGGCAAGTGTATACCGGGTAGGAGCGGGTTCACCCCCGAAGAGGCCCGGTCATGCGcccc                                                                                                          >  1:9020345/1‑149 (MQ=255)
                                                gtgtACCTCGAGCGGCGGGGGGACTTTGTTGGCCAACATGTGGGGGTTAGGCAAAAATGCTTCGGGGTTTAACCCGCTCCTACCCGGGCTTGTGTTTCCCTGGTTGGAGGGGGTTAACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAg                                                                                                      <  2:3316712/149‑1 (MQ=255)
                                                gTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGACCCCGCTCCTACACGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAg                                                                                                      <  2:5893636/149‑1 (MQ=255)
                                                   gACATAGCGCCGCGGGGGGATTTTGTTGGCAAAATTGTGGGGGTTCGGCCAAAACGCTGCGGGGGTGAACCCGCCCCTACACGGGCTTGTTTAGCCGTGGTTGGAGGGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGc                                                                                                   <  2:73056/149‑1 (MQ=255)
                                                     ccTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGGACCCCCGCCTACAAGGGCCTGTGTATCCCAGGGAGGAGCGGGGTCACCCCCGAAGAGGCCCGGGCATGCGCCCCGGAGGGCgg                                                                                                 >  2:3795827/1‑149 (MQ=255)
                                                      cacgtgCCGCTGGGGGACTTTGTTGGCCAAACTGCGGGGGTCCGCCCAAACAGCTTCGCGGGTGACCCCGCGCCTACACGGGCATGTGTACCCCTGGTTGGTGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCggg                                                                                                <  1:7526934/144‑1 (MQ=255)
                                                       tAGAGCCGCAGGGGGACTTTGTTGGCCAAAGTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGGTAAACCCCGCCAGCAAGGGCGGGGGGTTACCGGGGAGGGGCCGGGTGACCCCCGACGGGGGGCGGGGCTGCGCCCCGGAGGGCgggg                                                                                               >  1:5405881/1‑148 (MQ=255)
                                                         gagCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTAACCCCGCCAACAAGGGCCAGTGTATACCAGGGAGGAGCGGGTTGCCCCCCCAACAGGCCCCGGCCGGCGCCCCCGAGGGCggggta                                                                                             >  1:4366638/1‑146 (MQ=255)
                                                            ccGCAGGGGGACTTTGTTGGCCAACATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTCCAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATc                                                                                          <  2:7444010/149‑1 (MQ=255)
                                                             cGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGGAGGAGCGGGTTCACCCGCGCAGAGGCCCGGTCATTCGCCCCGGAGGGCGGGTTCATCg                                                                                         >  2:4280979/1‑149 (MQ=255)
                                                              gcggggggACTTTGTTGCCAAATTGGTGGGGTTTCGCAAAAAATGCTGCGGGGGTCACCCCGCGCCTACACGGGCTTGTGTATCCCTGGTTGGCGGGGTTACACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgg                                                                                        <  1:6271343/146‑1 (MQ=255)
                                                              gccgggggACTTTGTTGGCCAAACTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACACGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgg                                                                                        <  2:4424463/146‑1 (MQ=255)
                                                               cAGGGGGACTTTGTTGGCCACACTGCGGGGGTTCGGCCAAAACGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCggg                                                                                       <  2:2809425/149‑1 (MQ=38)
                                                               cAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAATGCTTCGCGGGTGTAACCGGTGCTAGAAGGGGGTGTGTTTGGGTGGTTGGTGGGGGTTGTCCCGCGGAGTTGCCCGGTGATTGGGCCCGGTGGGGGGGGtgataggg                                                                                        >  2:8530087/1‑142 (MQ=255)
                                                               cAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAATGCTTCGCGGGTGTAACCGCTCCAACAAGGGGATGTGTATACCGGGTTGGTGGGGGTTGACCCGCGTAGTTGCCCCGGCATGGGCCCCCTAGGGCGGGGTCATCggg                                                                                       >  1:3650467/1‑149 (MQ=255)
                                                                  ggggACTTGGTTGGCCAAAATGAGGGGGTTAGGCCAAACAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGCGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGgcg                                                                                    <  2:4392682/149‑1 (MQ=255)
                                                                        tttGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAAACCGCTCCTAAAAGGGCAAGTGTATCCCGGGGAGGAGCGGGTTCAACCGCGAAGAGGCCCGGTCATGCGCCCCCTAGGGCCGGTTCATCGGGGGGCCGAAc                                                                              >  2:3429145/1‑149 (MQ=255)
                                                                         ttgttgGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCGCCTACAAGGGCCTGTGTATCCCGGGGAGGCGCGGGGTCACCCGCGGAGAGGCCCGGTCCTGCGCCCCCTAGGGCGGGGTCAGCGGGGCGCCgcccc                                                                             >  2:4782950/1‑145 (MQ=255)
                                                                              gggcAAAATGGGGGGGGTGCGCCCAAAACGCTTCGGGGGTCACCCCGCTCCTACACGGGCTTGTTTATCCGTGGTCGGCGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAAccgccg                                                                         <  1:7280027/146‑1 (MQ=255)
                                                                                ccAAAATGCGGGGGTTCGGCCAAAAAGCTTCGCGGGTTAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGa                                                                      <  1:2096968/149‑1 (MQ=255)
                                                                                  aataTGAGGGGGTTAGGCCAAAATGCTTCGCGGGTGAACCCGCTCCTACTAGGGCATGTGTATCCCTGGTTGGTGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAAc                                                                    <  2:3653603/146‑1 (MQ=39)
                                                                                  aaaaTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTAACCCCTCCAACAAGGGGCGGTGTATCACGGGTAGGATCGGGTTGACCCGCGTAGAGGGCCCGGCCTGCGCCCCCTGGGGCGGGTTAATAGGGGCGCCGGACCCCCGCGAAc                                                                    >  1:5180803/1‑149 (MQ=255)
                                                                                     aTGAGGGGGTTTGGCAAAACAGCTGCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGa                                                                 <  2:3995086/149‑1 (MQ=255)
                                                                                       tgtgggggTTAGGCCAAAATGGTCCGGGGGTGAACCCGCTCCTCCCCGGGCTTTTGTATCCCTGTTCGGTGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAc                                                                <  2:2235975/146‑1 (MQ=255)
                                                                                       tgtgggggTTAGGCCAAAACGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAc                                                                <  2:2872071/146‑1 (MQ=255)
                                                                                       tgtgggggTCCGGCCAAAACGCGTCGCGGGTGAACCCGCGCCTACATGGGCTTGTGTACCCCTGGTAGGTGGGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAc                                                                <  1:3726707/146‑1 (MQ=255)
                                                                                       tgcgggggTTAGGCCAAAATGCTTCGCGGGTGAACCCGCTCCTACACGGGCATGTGTATCCCTGGTTGGTGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAc                                                                <  2:6477521/146‑1 (MQ=39)
                                                                                            gggTTAGGCCAAAAAGCTTCGCGGGTGTACCCGCGCCTAAAAGGGCCGGTGTATCCCGGGGAGGAGCGGGGTCACCCCCGGAGAGGCCCCGTCATGCGCCCCCGTGGGCGGGTTCAACGGGGCGCCGAACCGCCGCGGACAGCACCGAt                                                           >  1:8263758/1‑149 (MQ=255)
                                                                                              gTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCa                                                         <  1:2932007/149‑1 (MQ=255)
                                                                                               ttAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCAAGTGTATACCTGGTAGGAGCGGGTTCAACCCCGAAGAGGCCCGGGCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCaa                                                        >  2:2033360/1‑149 (MQ=39)
                                                                                                   cccAAAAAGCTTCGCGGGTGAACCCGCTCCAACACGGGCATGTGTAGCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAgcgc                                                    <  1:6732281/148‑1 (MQ=255)
                                                                                                      aaaaaGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTAACCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcga                                                 <  2:3686786/149‑1 (MQ=255)
                                                                                                        aaaGCTTCGGGGGTCACCCCGCTCCTACATGGGCATTTGTATCCCTGGTCGGAGGGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcgacg                                               <  1:5876655/149‑1 (MQ=255)
                                                                                                         aacgCTTCGCGGGTGAACCCGCTCCTACACGGGCTTGTGTAGCCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcgacg                                               <  2:1601117/146‑1 (MQ=38)
                                                                                                          aGCTTCGCGGGTGAACCCGCTCCCACAAGGGCATGTGTATCCCTGGTAGGAGCGCGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAg                                             <  2:8583967/149‑1 (MQ=255)
                                                                                                                    ggTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTg                                    >  2:7244857/1‑149 (MQ=255)
                                                                                                                    ggTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTg                                    >  2:4918957/1‑149 (MQ=255)
                                                                                                                         ccccGCCCCCCCATGGGCTGGTGTAGCCGGGGTTGGGGGGGGTCCCCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTg                               <  1:8594565/148‑1 (MQ=255)
                                                                                                                         aCCCGCTCCTACACGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTg                               <  2:5463038/149‑1 (MQ=255)
                                                                                                                         aCCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTg                               >  2:843139/1‑149 (MQ=255)
                                                                                                                           ccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCg                             >  1:6026487/1‑149 (MQ=255)
                                                                                                                            cGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAGCCGATCAAGCGCCGACGAGGCTGGGTTGGCCTGCGt                            >  1:6476532/1‑149 (MQ=255)
                                                                                                                            cGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                            >  1:1918413/1‑149 (MQ=255)
                                                                                                                            cGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                            >  1:574267/1‑149 (MQ=255)
                                                                                                                            cGCTCCTACAAGGGCATGTGTATCCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                            >  2:8393409/1‑149 (MQ=255)
                                                                                                                              cTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGttt                          <  2:6738065/149‑1 (MQ=255)
                                                                                                                                ccTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTc                        <  2:5158882/149‑1 (MQ=255)
                                                                                                                                 cTACACGGGCATGGGTAGCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCa                       <  2:2699879/149‑1 (MQ=255)
                                                                                                                                 cTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCa                       >  1:5135724/1‑149 (MQ=255)
                                                                                                                                  tACATGGGCATTTTTATCCCTGGTTGGTGGGGGTCCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAg                      <  1:7867335/149‑1 (MQ=255)
                                                                                                                                  tACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAg                      >  2:827075/1‑149 (MQ=255)
                                                                                                                                   aCAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg                     >  1:3263567/1‑149 (MQ=255)
                                                                                                                                    catgggCTTGTTAATCCCTGGTTGGCGGGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                    <  1:7759265/146‑1 (MQ=255)
                                                                                                                                    cacgggCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                    <  2:8714767/146‑1 (MQ=255)
                                                                                                                                    cacgggCATGTGTAGCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                    <  1:8100299/146‑1 (MQ=255)
                                                                                                                                    cacgggCATGTGTAGCCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                    <  2:2666910/146‑1 (MQ=255)
                                                                                                                                    cAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                    >  1:4161937/1‑149 (MQ=255)
                                                                                                                                     cagggattgtgTATCCCTGTTAGGCGGGGGTACACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGt                   <  1:8006918/142‑1 (MQ=255)
                                                                                                                                      cgggCTTGTGTACCCGTGGTGGGGGGGGGTCCCCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTg                  <  1:1074958/148‑1 (MQ=255)
                                                                                                                                      aGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTg                  >  1:1602154/1‑149 (MQ=255)
                                                                                                                                      aGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTg                  >  1:4719855/1‑149 (MQ=255)
                                                                                                                                        ggCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCa                >  2:8376623/1‑149 (MQ=255)
                                                                                                                                         gCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCaa               >  2:6211008/1‑149 (MQ=255)
                                                                                                                                          cATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAAc              >  1:1480486/1‑149 (MQ=255)
                                                                                                                                              tgtATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCa          <  2:8917515/149‑1 (MQ=255)
                                                                                                                                              tgtATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCa          >  1:7051265/1‑149 (MQ=255)
                                                                                                                                              tgtATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGGTGTCAGGGTGCAACGGCa          >  2:6364907/1‑149 (MQ=255)
                                                                                                                                                   cccTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgc     <  2:8016598/149‑1 (MQ=255)
                                                                                                                                                    ccTGGTTGGTGGGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcg    <  1:5022550/149‑1 (MQ=255)
                                                                                                                                                     cTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcgg   >  2:5179254/1‑149 (MQ=255)
                                                                                                                                                      tGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggc  >  2:5085533/1‑149 (MQ=255)
                                                                                                                                                      tGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggc  >  2:6564690/1‑149 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
ACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAGCGGC  >  NC_002947/5729158‑5729454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: