New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2477094 = | 2 (0.130) | 6 (0.530) | 3/186 | 0.7 | 77.9% | intergenic (+6/+143) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
? | NC_002947 | 2477218 = | 2 (0.180) | intergenic (+130/+19) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
GCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCC > NC_002947/2476959‑2477169 | tgtggaatggtgccgggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttaca < 2:255163‑M1/1‑1 (MQ=255) atggtgccgggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCtgt < 2:207057‑M1/7‑1 (MQ=255) ggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCctc > 2:157822‑M1/121‑136 (MQ=255) gtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTaa > 1:231094‑M1/110‑136 (MQ=255) tgCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGACTCTTCTGGGGTtaaac > 2:277180/1‑134 (MQ=255) ttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCg > 1:207057‑M1/105‑136 (MQ=255) ttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCg > 1:65946‑M1/105‑136 (MQ=255) ttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCg > 1:301795‑M1/103‑134 (MQ=255) ttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCg < 2:301795‑M1/32‑1 (MQ=255) gCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTacgacg < 2:300733/136‑1 (MQ=255) gatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCa > 1:127500‑M1/65‑136 (MQ=255) ttgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAc > 2:209829‑M1/64‑136 (MQ=255) atgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAc > 1:313532‑M1/64‑136 (MQ=255) atgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAc > 1:63859‑M1/64‑136 (MQ=255) atgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAc > 1:91272‑M1/64‑136 (MQ=255) ctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAcccc > 2:266300‑M1/61‑136 (MQ=255) | GCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCC > NC_002947/2476959‑2477169 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |