New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2559172	3 (0.190)	6 (0.380)	6/262	0.6	66.8%	coding (161/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 4632961	NA (NA)					intergenic (‑85/‑1616)	PP_4092/PP_5655	transposase/hypothetical protein

TTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCAGAGCAATTATAAAGGTTGGGGAAAAGCAC  >  NC_002947/4632847‑4633037                                                                                                                   |                                                                             tttttCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACt                                                         >  1:155796/1‑136 (MQ=255) tttttCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACt                                                         >  1:157804/1‑136 (MQ=255)      cGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGActc                                                    >  1:181336/1‑136 (MQ=255)       gACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGActct                                                   >  1:150026/1‑136 (MQ=17)            tGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTgg                                              <  2:12203/136‑1 (MQ=255)              cggTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGcc                                            >  1:366135/3‑136 (MQ=255)                 tCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGa                                         <  2:41808/136‑1 (MQ=255)                            aatGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCag                              <  2:326852/135‑1 (MQ=255)                                                      tCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCAGAGCAATTATAAAGGTTGGGGAAAAGc    <  2:215752/136‑1 (MQ=255)                                                        gggAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCAGAGCAATTATAAAGGTTGGGGAAAAGCAc  <  2:155796/136‑1 (MQ=255)                                                        gggAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCAGAGCAATTATAAAGGTTGGGGAAAAGCAc  <  2:157804/136‑1 (MQ=255)                                                                   aTCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCAGAGCAATTATAAAGGTTGGGGAAAAGc    >  1:349215/1‑123 (MQ=255)                                                                   aTCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCAGAGCAATTATAAAGGTTGGGGAAAAGc    <  2:349215/123‑1 (MQ=255)                                                                                                                   |                                                                             TTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGTCTACCAGAGCAGCTAACTGACTCTAGTGGCCTGACTATCTGGCAGAGCAATTATAAAGGTTGGGGAAAAGCAC  >  NC_002947/4632847‑4633037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.