Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5007463	5007468	6	3 [0]	[1] 4	PP_4409	site‑specific recombinase

TCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAA  >  NC_002947/5007464‑5007604      |                                                                                                                                        tCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTc       >  2:275695/1‑136 (MQ=255)      agTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGcc           >  1:364701/1‑127 (MQ=255)      agTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGcc           <  2:364701/127‑1 (MQ=255)      agTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGaa  >  1:178030/1‑136 (MQ=255)      |                                                                                                                                        TCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAA  >  NC_002947/5007464‑5007604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑