New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1622749 =	10 (0.520)	16 (0.980)	7/206	NT	62.2%	intergenic (‑13/+160)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC
	?	NC_002947	1622888 =	11 (0.680)					intergenic (‑152/+21)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC

CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1622832‑1622749 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTC  >  NC_002947/1622888‑1622986                                                                                                                                                                                         CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGg                                                 >  1:512705/1‑135 CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGC                                                 >  2:16845/1‑136 CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGC                                                 >  1:375480/1‑136 CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTTCTGGATCAGGCCGAATTCCTTGGCCAGC                                                 >  1:89423/1‑136 CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCCGGCCGATTTCCTTGGCCAGC                                                 >  1:450327/1‑136 CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGC                                                 >  1:162561/1‑136 CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGC                                                 >  1:421548/1‑136 CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGAGCCCGATCCCGACACAAGGCCGCTAAAACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGC                                                 >  1:145740/1‑136  GATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCCCGACACAAGGCCGCTCC                                                                                                            <  1:528016/76‑1  GATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCCCGACACAAGGCCGCTCC                                                                                                            >  2:528016/1‑76       GATGCTTCGTACAGATCGCATCGGCAGGTTAAGCGGCAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTG                                           >  1:300713/1‑136                                           CAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGC       >  1:391433/1‑136                                           CAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGC                                                                  <  1:252814/77‑1                                           CAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGC                                                                  >  2:252814/1‑77                                           CAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACACGAGAGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGACCAGC       >  1:322945/1‑136                                           CAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCC                                                                                                            <  1:456680/35‑1                                           CAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCC                                                                                                            >  2:456680/1‑35                                              CTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCT    >  1:241252/1‑136                                               TTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTT   >  1:98782/1‑136                                                TCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCGTACTGGATCAGGCCGAATTCCTTGGCCCGCGCCTTGTAGTCAGCCACTTGCTTCGTCACATAGCCGTCCAGCTCTTg  >  1:278070/1‑135                                                                                                                                                                                         CGATACGATGCTTCGTACAGATCGCATCGGCAGGTTTAGCGGCAGCTTCGCGCCCGATCGCGACGCAAGGCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1622832‑1622749 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTC  >  NC_002947/1622888‑1622986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.