New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 744925 = | NA (NA) | 12 (0.630) | 8/242 | NT | 100% | intergenic (‑587/+44) | PP_0636/PP_0637 | cold shock DNA‑binding domain‑containing protein/transposase |
? | NC_002947 | 2559164 = | 0 (0.000) | coding (153/1881 nt) | PP_2240 | ABC transporter permease/ATP‑binding protein |
ACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCC > NC_002947/744810‑745050 | aCTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCAc > 2:536651/1‑136 (MQ=255) gAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTAcc > 2:410097/1‑136 (MQ=255) aGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAg < 2:343730/136‑1 (MQ=255) cAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCg < 1:340110/123‑1 (MQ=255) cAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCg > 2:340110/1‑123 (MQ=255) ggCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTcc > 1:245600/1‑136 (MQ=37) | ACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCC > NC_002947/744810‑745050 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |