New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1011323	14 (0.730)	3 (0.160)	3/244	NT	18.8%	intergenic (‑258/+192)	PP_0871/SBRG_Ecoli_galM	glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM
	?	NC_002947	1016273 =	12 (0.620)					intergenic (‑500/‑268)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3

AGTCCCCAACCGAAGCGGGTTGCAGGGGAGTGGACGTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATG‑CTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATAACCATAGCGAAAATAGTGGCGCAGTGTAAGGT  >  NC_002947/1011192‑1011427                                                                                                                                    |                                                                                                          aGTCCCCAACCGAAGCGGGTTGCAGGGGAGTGGACGTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGtctc                                                                                                       <  2:267882‑M1/136‑5 (MQ=255)             aaGCGGGTTGCAGGGGAGTGGACGTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCtttt                                                                                           <  2:198993/136‑1 (MQ=255)                   gTTGCTGGGGAGTGGTGGGCTCGTTGGGCGTATAGGTTCCCATCTGAGGGGGCATTTGGCCTGTGTTAATCGGTGGGTTGCGGGTTTTTGGGGGAGATAAACAGCGTCTTGATGTCTCAAATCATCTTTTAATGat                                                                                     <  2:424161/136‑1 (MQ=255)                       cAGGGTAGTGGACGTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGTGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGataata                                                                                 <  2:469066/136‑1 (MQ=255)                                  aCGTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATtat                                                                      >  1:293187/1‑136 (MQ=255)                                  aCGTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATtat                                                                      >  1:327455/1‑136 (MQ=255)                                    gTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTatat                                                                    >  1:377083/1‑136 (MQ=255)                                               cGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGcgacga                                                         >  2:312674/1‑136 (MQ=255)                                                     ggTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAAc                                                   <  2:266072/136‑1 (MQ=255)                                                                   gcggcATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGtgctgcaggcgttgaaataactgcgttttggttatttgtcgtgataaagcgattgcctgttgg                                            <  2:181618‑M1/129‑64 (MQ=255)                                                                   gcggcATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGtgctgcaggcgttgaaataactgcgttttggttatttgtcgtgataaagcgattgcctgttgg                                            >  1:181618‑M1/1‑66 (MQ=255)                                                                   gcggcATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGc                                     >  1:513879/1‑136 (MQ=255)                                                                         tttGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATAAcc                               <  1:312674/136‑1 (MQ=255)                                                                                     tAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCTATGCTTACGCATAACCATAGCGAAAATa                   >  2:407056/1‑136 (MQ=255)                                                                                          gCTGGGTTGCGGGTTTTTGGGCCATAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATAACCATAGCGAAAATAGTGgc              <  1:9016/136‑1 (MQ=255)                                                                                               gTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATAACCATAGCGAAAATAGTGGCGCAgt         >  1:364492/1‑136 (MQ=255)                                                                                                      ttttttgGGCGAGAAAAACAGCGACTTGATGtgctgcaggcgttgaaataactgcgttttggttatttgtcgtgataaagcgattgcctgttgggtttgttttgtttgtgccggcctcttcgcgggtaaactcgct  <  1:303928‑M1/135‑106 (MQ=255)                                                                                                      gTTTTTGGGCGAGAAAAACAGCGACTTGATGTCTCAAATCATCTTTTAATGATAATAATTCTCATTAAATTGCCGCGACGAAGCAACAGCAATGCTTACGCATAACCATAGCCAAAATAGTGGCGCAGTGTAAGgt  >  2:108054/1‑136 (MQ=255)                                                                                                                                    |                                                                                                          AGTCCCCAACCGAAGCGGGTTGCAGGGGAGTGGACGTCTCCGTGGGCGTAAAGGTTCCCATCTGAGGCGGCATTTGGCCAGTGTTAATCGCTGGGTTGCGGGTTTTTGGGCGAGAAAAACAGCGACTTGATG‑CTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATAACCATAGCGAAAATAGTGGCGCAGTGTAAGGT  >  NC_002947/1011192‑1011427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.