New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2559172	0 (0.000)	17 (0.880)	14/244	NT	100%	coding (161/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
	?	NC_002947	4541196 =	NA (NA)					intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase

ATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGGCGCAGTTGGCGGCCGTTGCTGGTGTTTGCCCTGCTGCTGGTCCTGACGCTGTTTTCGGT  >  NC_002947/2559045‑2559307                                                                                                                                |                                                                                                                                        ctgccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAActc                                                                                                                                 >  2:368405‑M2/120‑136 (MQ=255)   gccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTg                                                                                                                               >  1:24379‑M2/118‑136 (MQ=255)   gccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTg                                                                                                                               >  1:332119‑M2/118‑136 (MQ=255)   gccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTg                                                                                                                               >  1:77042‑M2/118‑136 (MQ=255)         cTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCGTCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcat                                                                                                                         <  1:132749‑M1/136‑17 (MQ=255)           cgcgGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatcc                                                                                                                       <  2:336138‑M1/136‑19 (MQ=255)           cgcgGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatcc                                                                                                                       >  2:281228‑M1/1‑118 (MQ=255)            ctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGt                                                                                                                      <  1:368405‑M2/28‑1 (MQ=255)             tcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGtt                                                                                                                     <  1:291541‑M2/29‑1 (MQ=255)             tcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGtt                                                                                                                     <  1:351122‑M2/29‑1 (MQ=255)               atcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGtttt                                                                                                                   >  2:181689‑M2/106‑136 (MQ=255)                         gactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTggg                                                                                                         >  2:529778‑M2/96‑136 (MQ=255)                         gCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccg                                                                                                         <  1:340615‑M1/136‑33 (MQ=255)                           aCGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtc                                                                                                       >  2:399962‑M1/1‑102 (MQ=255)                                                         tCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatt                                                                         >  1:145456‑M1/1‑72 (MQ=255)                                                                   cAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCTGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctgga                                                               >  1:539156‑M1/1‑62 (MQ=255)                                                                    aaGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggag                                                              >  2:517912‑M1/1‑61 (MQ=255)                                                                      gagagCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagcc                                                            <  2:84770‑M1/136‑78 (MQ=255)                                                                      gagagCCTAAGCGGGCTGGCAATCGCATCGATCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagcc                                                            <  1:55449‑M1/136‑78 (MQ=255)                                                                      cagagcCTAAGCAGGCTGGCAATCGCCGCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggacccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagcc                                                            <  2:289129‑M1/135‑78 (MQ=255)                                                                        gtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGgcgc                                                          >  2:182138‑M2/49‑136 (MQ=255)                                                                               tggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGGCGCAGTTggc                                                   <  2:194677‑M2/95‑1 (MQ=255)                                                                               tggcttccaccttgtggtaggtggggttcatggatcggttaCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGGCGCAGTTggc                                                   <  2:299841‑M2/95‑1 (MQ=255)                                                                                      tggcAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcg                                            >  2:276360‑M1/1‑43 (MQ=255)                                                                                                                  cAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac                <  1:304147‑M1/136‑122 (MQ=255)                                                                                                                  cAGCTTCACTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac                <  1:255808‑M1/136‑122 (MQ=255)                                                                                                                    gttaCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGGCGCAGTTGGCGGCCGTTGCTGGTGTTTGCCCTGCTGCTGGTCCTGAc              >  2:4896‑M2/5‑136 (MQ=255)                                                                                                                         aCTGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctctacc         <  1:517912‑M1/136‑129 (MQ=255)                                                                                                                           tGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgat                                               >  1:431047‑M1/1‑6 (MQ=255)                                                                                                                           tGCAGCgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgat                                               <  2:431047‑M1/96‑91 (MQ=255)                                                                                                                             cAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGGCGCAGTTGGCGGCCGTTGCTGGTGTTTGCCCTGCTGCTGGTCCTGACGCTGTTTTc     <  2:332119/136‑1 (MQ=255)                                                                                                                                cgtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctctcccccaagcc  >  1:224076‑M1/1‑1 (MQ=255)                                                                                                                                ccGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGGCGCAGTTGGCGGCCGTTGCTGGTGTTTGCCCTGCTGCTGGTCCTGACGCTGTTTTCGGt  >  2:24936/1‑136 (MQ=255)                                                                                                                                |                                                                                                                                        ATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATTTCAGTTTCAGGCGCAGTTGGCGGCCGTTGCTGGTGTTTGCCCTGCTGCTGGTCCTGACGCTGTTTTCGGT  >  NC_002947/2559045‑2559307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.