| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,863,689 | C→A | 18.2% | intergenic (‑53/‑73) | PP_2510 ← / → PP_2511 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,863,689 | 0 | C | A | 18.2% | 54.8 / 2.2 | 22 | intergenic (‑53/‑73) | PP_2510/PP_2511 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (6/12); new base A (2/2); total (8/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01 | |||||||||||
AGGCTGCAAAGGGCTCGGGTGAATACGCAGTTCACCCAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCTGTACTTCGACGGCGCCTGCCCATTGTGCGCTCGGG > NC_002947/2863575‑2863822 | agGCTGCAAAGGGCTCGGGTGAATACGCAGTTCACCCAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTc < 1:409772/136‑1 (MQ=255) ggTGAATACGCAGTTCACCCAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCACAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACtt > 2:324549/1‑136 (MQ=255) aCGCAGTTCACCCAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACaaa < 1:231156/136‑1 (MQ=255) tCACCCAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGt < 2:293721/136‑1 (MQ=255) tCACCCAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGt > 1:363879/1‑136 (MQ=255) cccAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGTCGCGCCCCCAGCCCCCCATTGCGAATTTCCTTGTTTCATCTAACTTATACAAAAACTTGTACa < 1:39393/136‑1 (MQ=255) ccAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGATTCAGATAACTTATACAAAAAATTGTACaa > 2:39393/1‑136 (MQ=255) cAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCACAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAg > 2:22040/1‑136 (MQ=255) ccGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCt < 1:407075/91‑1 (MQ=255) ccGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCt > 2:407075/1‑91 (MQ=255) ccGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGttt > 2:111713/1‑96 (MQ=255) ccGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGttt < 1:111713/96‑1 (MQ=255) gcgATATTAGCAAATCCGGGGGCGGCGCTAGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAATACTTGTACAAGCATGAGAGGTTGt < 2:379539/136‑1 (MQ=255) aTCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCaa < 1:4805/136‑1 (MQ=255) ggTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGc < 2:427503/136‑1 (MQ=255) cTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCAccc > 1:347835/1‑136 (MQ=255) tCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCACAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCt < 1:22040/136‑1 (MQ=255) ggCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCTGTACTTCGACg < 2:363879/136‑1 (MQ=255) cAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCTGTACTTCGACGgc < 2:254191/136‑1 (MQ=255) cacaAATCCATCGGCGCGCCCACAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACACTGTACTTCGACGGCGcc < 1:324549/136‑1 (MQ=255) cGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAAC‑TGTACATGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCTGTACTTCGACGGCGCCTGCCCATTGTgc < 1:488567/136‑1 (MQ=255) gcgcgcCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCTGTACTTCGACGGCGCCTGCCCATTGTgcg > 1:270882/1‑136 (MQ=255) ccccAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCTGTACTTCGACGGCGCCTGCCCATTGTGCGCTCggg < 2:351302/136‑1 (MQ=255) | AGGCTGCAAAGGGCTCGGGTGAATACGCAGTTCACCCAGCGGAAAGGCCGCGATCTTAGCAAATCCGGGTGCGGCGCTCGATCTCACCGGCAACACAAATCCATCGGCGCGCCCCCAGCCCCCCATTGCGAATTTCCTGGTTTCAGCTAACTTATACAAAAACTTGTACAAGCATGAGAGGTTGTACATGTATTGCAAGTGGCCCTTCACCCTGTACTTCGACGGCGCCTGCCCATTGTGCGCTCGGG > NC_002947/2863575‑2863822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |