| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,189,092 | G→T | 19.9% | L196F (TTG→TTT) | PP_2794 → | short‑chain dehydrogenase/reductase family oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,189,092 | 0 | G | T | 19.9% | 57.3 / 2.6 | 20 | L196F (TTG→TTT) | PP_2794 | short‑chain dehydrogenase/reductase family oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base G (11/5); new base T (2/2); total (13/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGGCGCCGTCGGCCCTTACCTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCTGC > NC_002947/3188962‑3189195 | ccGGCGCCGTCGGCCCTTACCTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTTAACg < 1:139621/135‑1 (MQ=255)ccGGCGCCGTCGGCCCTTACCTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTTAACg > 2:139621/1‑135 (MQ=255)ccGGCGCCGTCGGCCCTTACCTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTTAACg > 2:136944/1‑135 (MQ=255)ccGGCGCCGTCGGCCCTTACCTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTTAACg < 1:136944/135‑1 (MQ=255) ccGTCGGCCCTTACCTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCtt < 1:229697/136‑1 (MQ=255) cTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCAAGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCAACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAgg > 1:360479/1‑136 (MQ=255) tGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGc > 2:424835/1‑136 (MQ=255) gcCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATTGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCTGCTACGTGATGACTCATTTGAACGCGCCCTACCTTGCCAGCGAGGcccgag > 1:466876/1‑132 (MQ=255) gcCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTg > 2:278311/1‑136 (MQ=255) ccTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTgcgc < 1:287037/136‑1 (MQ=255) gACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATcccc < 2:35039/136‑1 (MQ=255) cATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCcgccgc > 1:257053/1‑136 (MQ=255) cATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCcgccgc > 1:249471/1‑136 (MQ=255) tGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCtt > 1:252783/1‑136 (MQ=255) gAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGc < 1:424835/136‑1 (MQ=255) gcgcCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGAc > 1:213732/1‑136 (MQ=255) tGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGAc > 1:239035/1‑136 (MQ=255) cGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCt < 1:278311/136‑1 (MQ=255) gCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGATGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTtgctgctgc > 1:268361/1‑136 (MQ=255) gCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTtgctgctgc > 1:137481/1‑136 (MQ=255) | CCGGCGCCGTCGGCCCTTACCTGGCGGCCAAGGCCGGCCTGGCCCACCTGACCCGCGCCATGGCGCTGGAGTTGGCGCGCCATGGTATCCGGGTGAACGCCCTGGCGCCCGGCTACGTGATGACTGATTTGAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCTGC > NC_002947/3188962‑3189195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |