| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,363,855 | C→T | 28.6% | G274S (GGC→AGC) | PP_2955 ← | CorA family magnesium/cobalt transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,363,855 | 0 | C | T | 28.6% | 17.2 / 5.6 | 14 | G274S (GGC→AGC) | PP_2955 | CorA family magnesium/cobalt transporter |
| Reads supporting (aligned to +/- strand): ref base C (5/5); new base T (2/2); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.01e-01 | |||||||||||
ACAGGTTGACACTATTTCTTGGCACGGCGGGTCATGCCATACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTCAGGTTGCGCAGCGCGTGGTTCATGCCGTTGTTGGCCAGGTTGCCGCGGGCCTC > NC_002947/3363732‑3363990 | aCAGGTTGACACTATTTCTTGGCACGGCGGGTCATGCCATACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTcatcat < 1:485729/136‑1 (MQ=255) acTATTTCTTGGCACGGCGGGTCATGCCATACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCTGGCGGTCATCATGCTGAACTcc > 1:39322/1‑136 (MQ=255) acTATTTCTTGGCACGGCGGGTCATGCCATACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCTGGCGGTCATCATGCTGAACTcc > 1:36673/1‑136 (MQ=255) cTATTTCTTGGCACGGCGGGTCATGCCATACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCcgg < 2:508121/115‑1 (MQ=255) cTATTTCTTGGCACGGCGGGTCATGCCATACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCcgg > 1:508121/1‑115 (MQ=255) aTACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGt < 1:162314/136‑1 (MQ=255) gCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGa < 1:400982/136‑1 (MQ=255) ccATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAAcaccac > 2:382325/1‑136 (MQ=255) ccATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAAcaccac > 2:393162/1‑136 (MQ=255) tGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCTGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACAtt < 1:444035/136‑1 (MQ=255) aaGAACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCAAGCTGAACTCCGACATGCCGCCGAAGCTCGCCAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTc > 2:362616/1‑136 (MQ=255) cagcGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCTACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTCAGGTTGCGCAGCGCGTGGTTc > 1:230919/1‑136 (MQ=255) gTGGGGAACGTCAACCACCAGGGCATGCTGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTCAGGTTGCGCAGCGCGTGGTTCATGc < 2:36673/136‑1 (MQ=255) gTGGGGAACGTCAACCACCAGGGCATGCTGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTCAGGTTGCGCAGCGCGTGGTTCATGc < 2:39322/136‑1 (MQ=255) ggggAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGa > 2:142291/1‑101 (MQ=255) ggggAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGa < 1:142291/101‑1 (MQ=255) cggcggTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTCAGGTTGCGCAGCGCGTGGTTCATGCCGTTGTTGGCCAGGTTGCCGCGGGCCTc > 1:280714/1‑136 (MQ=255) cggcggTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTCAGGTTGCGCAGCGCGTGGTTCATGCCGTTGTTGGCCAGGTTGCCGCGGGCCTc > 1:260943/1‑136 (MQ=255) | ACAGGTTGACACTATTTCTTGGCACGGCGGGTCATGCCATACGCCGTAAAGCCACGGCCATGGCCCCGCCAAGTACCGCCATGGCCAGCAGCAGCGTGGGGAACGTCAACCACCAGGGCATGCCGGCGGTCATCATGCTGAACTCCGACATGCCGCCGATGCTGGCGAGCAGGTTCAAGGGCAGGAACACCACATTGATCATGGTCAGGTTGCGCAGCGCGTGGTTCATGCCGTTGTTGGCCAGGTTGCCGCGGGCCTC > NC_002947/3363732‑3363990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |