| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,603,520 | G→T | 15.4% | P393T (CCG→ACG) | PP_3175 ← | ferredoxin reductase dioxygenase subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,603,520 | 0 | G | T | 15.4% | 66.8 / 2.2 | 26 | P393T (CCG→ACG) | PP_3175 | ferredoxin reductase dioxygenase subunit |
| Reads supporting (aligned to +/- strand): ref base G (8/13); new base T (2/2); total (11/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-01 | |||||||||||
GGCCATGCTGGTAGGTCCAGAAAAACGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGCCTTACCCCGGTGCCGAG > NC_002947/3603385‑3603652 | ggCCATGCTGGTAGGTCCAGAAAAACGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCgg > 1:482153/1‑136 (MQ=255) ccATGCTGGTAGGTCCAGAAAAACGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGTGa > 2:317582/1‑136 (MQ=255) ccATGCTGGTAGGTCCAGAAAAACGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGTGa > 2:181032/1‑136 (MQ=255) ccATGCTGGTAGGTCCAGAAAAACGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGCGa > 2:319554/1‑136 (MQ=255) ggTCCAGAAAAACGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGata > 2:300625/1‑136 (MQ=255) aaaaaCGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCcgg > 1:491585/1‑136 (MQ=255) aaaaaCGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCcgg > 1:522360/1‑136 (MQ=255) gTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCca < 2:90565/136‑1 (MQ=255) tACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCcac < 1:445780/136‑1 (MQ=255) cATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTc > 2:10762/1‑136 (MQ=255) cGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTgcgc > 2:94602/1‑136 (MQ=255) ttGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGc < 1:334267/136‑1 (MQ=255) gggCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCAc < 2:389334/136‑1 (MQ=255) cAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTCCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCATCGCCAAGCGGCACGcca > 2:61713/1‑135 (MQ=255) gcCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAg > 2:50040/1‑136 (MQ=255) tCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCgg < 1:161465/136‑1 (MQ=255) cGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGt < 1:94602/136‑1 (MQ=255) cGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGt < 1:48214/136‑1 (MQ=255) cGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGt < 2:466788/136‑1 (MQ=255) gcgcACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCt > 2:274434/1‑118 (MQ=255) gcgcACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCt < 1:274434/118‑1 (MQ=255) aCCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGcc < 2:324571/136‑1 (MQ=255) aCCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGcc < 2:467831/136‑1 (MQ=255) gcgcCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGCCTTAcc < 2:329526/136‑1 (MQ=255) gAGCGTGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGCCTTACCCCGGTGCCg < 1:317582/136‑1 (MQ=255) gAGCGTGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGCCTTACCCCGGTGCCg < 1:181032/136‑1 (MQ=255) gCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGCCTTACCCCGGTGCCGAg < 2:139203/136‑1 (MQ=255) | GGCCATGCTGGTAGGTCCAGAAAAACGGTACATCGGCATAACGGCGTTGTTCGCCAAGCATGTTGGCGGCGGCGATCACCCCGTGTTGCTGGGCCAGGCGCCAGTGCTCGATGCGCACCGGGCGCCCCGTGAGCGGGAACGTGGCGATATCGCCGGCGGCCCACAAACCGTCAGCTGCGCGCATTTCTGCGTCGACCCTCACCGATTTGTCTTCGCCAAGCGGCACGCCTTGAAGGAACGCGGTGGCGGGCCTTACCCCGGTGCCGAG > NC_002947/3603385‑3603652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |