| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,630,210 | C→A | 44.4% | intergenic (+3808/+756) | PP_5654 → / ← PP_4091 | phosphotriesterase/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,630,210 | 0 | C | A | 44.4% | 2.8 / 4.4 | 9 | intergenic (+3808/+756) | PP_5654/PP_4091 | phosphotriesterase/transposase |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base A (2/2); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGAGAATGACGAGTCATACCGCTTCGGCTGGGACGAACTGGACCGGCTGGTGGCACAAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCCATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGATAATGCCCCGCCGACACGGACGGCTGCCATCCGCCATGACTTCGAGCGGGACGCCATCGGCCGGCTTGTCAGCAAGCGCACCGAAGA > NC_002947/4630086‑4630334 | cGAGAATGACGAGTCATACCGCTTCGGCTGGGACGAACTGGACCGGCTGGTGGCACAAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCAATGTGCCCTCg > 2:100403/1‑136 (MQ=17)cGAGAATGACGAGTCATACCGCTTCGGCTGGGACGAACTGGACCGGCTGGTGGCACAAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCAATGTGCCCTCg > 2:208769/1‑136 (MQ=17) aTACCGCTTCGGCTGGGACGAACTGGACCGGCTGGTGGCACAAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCCATGTGCCCTCGCCTGACGAGCAgccg < 2:181731/136‑1 (MQ=32) aTACCGCTTCGGCTGGGACGAACTGGACCGGCTGGTGGCACAAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCCATGTGCCCTCGCCTGACGAGCAgccg < 2:247796/136‑1 (MQ=32) ggACCGGCTGGTGGCACAAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCCATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGATAATGCCccgccg > 1:27040/1‑136 (MQ=37) cacaAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCCATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGATAATGCCCCGCCGACACGGACGGCTGc > 2:400012/1‑136 (MQ=40) acaAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCAATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGATAATGCCCCGCCGACACGGACGGCTGcc < 1:100403/136‑1 (MQ=255) acaAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCAATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGATAATGCCCCGCCGACACGGACGGCTGcc < 1:208769/136‑1 (MQ=255) ttCGTCTTACCCATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGATAATGCCCCGCCGACACGGACGGCTGCCATCCGCCATGACTTCGAGCGGGACGCCATCGGCCGGCTTGTCAGCAAGCGCACCGAAGa > 1:380787/1‑136 (MQ=37) | CGAGAATGACGAGTCATACCGCTTCGGCTGGGACGAACTGGACCGGCTGGTGGCACAAAAAGACCTGGATAGCAGTGGCCGCCTCTATGCCTACAACGTGCTGGATGAGGTCATTCGTCTTACCCATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGATAATGCCCCGCCGACACGGACGGCTGCCATCCGCCATGACTTCGAGCGGGACGCCATCGGCCGGCTTGTCAGCAAGCGCACCGAAGA > NC_002947/4630086‑4630334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |