| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,905,584 | C→A | 17.4% | P18P (CCC→CCA) | PP_4309 → | NCS1 family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,905,584 | 0 | C | A | 17.4% | 59.0 / 2.3 | 23 | P18P (CCC→CCA) | PP_4309 | NCS1 family transporter |
| Reads supporting (aligned to +/- strand): ref base C (12/7); new base A (2/2); total (14/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.10e-01 | |||||||||||
ACGAGATGGCGAGCCCGTGCGCATGCCCGCTCATCGCAGTCCAAGTGCATCAGGAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTCGCGCTGTGGACAAACGAT > NC_002947/4905466‑4905716 | acgaGATGGCGAGCCCGTGCGCATGCCCGCTCATCGCAGTCCAAGTGCATCAGGAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCgg < 1:32582/136‑1 (MQ=255) agaTGGCGAGCCCGTGCGCATGCCCGCTCATCGCAGTCCAAGTGCATCAGGAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGccc > 1:419695/1‑135 (MQ=255) gcgcATGCCCGCTCATCGCAGTCCAAGTGCATCAGGAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGt < 1:394757/136‑1 (MQ=255) gcgcATGCCCGCTCATCGCAGTCCAAGTGCATCAGGAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGt < 1:397420/136‑1 (MQ=255) ccGCTCATCGCAGTCCATGTGGATCAGGAGGCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGATCTATCGGTTGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGcc < 2:461118/136‑1 (MQ=255) ccGCTCATCGCAGTCCAAGTGCATCAGGAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGcc < 2:216795/136‑1 (MQ=255) ggAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTcgcg < 2:355349/136‑1 (MQ=255) ggAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTcgcg > 1:331715/1‑136 (MQ=255) cgGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGt > 2:349083/1‑136 (MQ=255) aaTGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATg > 1:171301/1‑136 (MQ=255) aCCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTgggg > 1:63567/1‑136 (MQ=255) ccccTGAACTATCCGTCGCCAGCACACACCCAGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCcg > 1:411896/1‑77 (MQ=255) ccccTGAACTATCCGTCGCCAGCACACACCCAGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCcg > 1:458256/1‑77 (MQ=255) ccccTGAACTATCCGTCGCCAGCACACACCCAGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCcg < 2:411896/77‑1 (MQ=255) ccccTGAACTATCCGTCGCCAGCACACACCCAGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCcg < 2:458256/77‑1 (MQ=255) ccTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGCCCGTCGCTGGGGCGGCTACa > 1:198223/1‑136 (MQ=255) cTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCt > 1:78021/1‑136 (MQ=255) cTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCt > 2:345839/1‑136 (MQ=255) cGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTcgcg < 2:385986/136‑1 (MQ=255) gTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTCgcgc > 1:254327/1‑136 (MQ=255) gTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCAGCATAACCGCGACCTCGCGCCAAAGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTCgcgc > 2:335024/1‑136 (MQ=255) cAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTCGCGCTGTgg > 1:98148/1‑136 (MQ=255) cAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTCGCGCTGTgg > 1:163591/1‑136 (MQ=255) ccccGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTCGCGCTGTGGACAAACGAt < 1:345839/136‑1 (MQ=255) | ACGAGATGGCGAGCCCGTGCGCATGCCCGCTCATCGCAGTCCAAGTGCATCAGGAGCCCGCCGGAATGAGTAGCAGCCTCGACCTTGCCCCTGAACTATCCGTCGCCAGCACACACCCCGCGTCCACGCTTGCCGGCCACCAGCCGGACCTTGTTCTCAGCCCGCGCCTGCATAACCGCGACCTCGCGCCAACGCGTATGGAAGGCCGTCGCTGGGGCGGCTACAGCATCTTCGCGCTGTGGACAAACGAT > NC_002947/4905466‑4905716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |