| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,917,234 | G→T | 16.6% | A158A (GCC→GCA) | ccmG ← | holocytochrome c synthetase subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,917,234 | 0 | G | T | 16.6% | 64.9 / 2.2 | 24 | A158A (GCC→GCA) | ccmG | holocytochrome c synthetase subunit |
| Reads supporting (aligned to +/- strand): ref base G (11/9); new base T (2/2); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.44e-01 | |||||||||||
GATAGGTGTCGATCGCCGCCTTGGCCACACCGGCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGCCCTGCTCGTCACGAATATCCAGCTGAT > NC_002947/4917099‑4917361 | gATAGGTGTCGATCGCCGCCTTGGCCACACCGGCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTg > 2:493752/1‑136 (MQ=255) ggTGTCGATCGCCGCCTTGGCCACACCGGCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCAt > 2:31678/1‑136 (MQ=255) ccTTGGCCACACCGGCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACg > 2:492076/1‑136 (MQ=255) ccTTGGCCACACCGGCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGACCTGATACAACGTCGCCAGCTGTTCAAGCCAGACCGTGGCATCGACGATGCATACg > 2:97751/1‑136 (MQ=255) ggCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTTGCATCGACGATGCCTACGTGCTTGTAGCGga > 2:497175/1‑136 (MQ=255) ggCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTTGCATCGACGATGCCTACGTGCTTGTAGCGga > 2:12194/1‑136 (MQ=255) cTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATcga < 2:514776/86‑1 (MQ=255) cTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATcga > 1:514776/1‑86 (MQ=255) cagccagcGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGttt < 1:294439/136‑1 (MQ=255) agccagcGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCACACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTc > 1:397883/1‑136 (MQ=255) gccagcGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTcc < 2:337413/136‑1 (MQ=255) ccagcGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCg < 1:493752/136‑1 (MQ=255) cagcGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCgg < 1:351453/136‑1 (MQ=255) aTGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATa > 1:107240/1‑136 (MQ=255) ggCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCCTACACCCCa > 1:87068/1‑136 (MQ=255) ccTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAg < 2:107240/136‑1 (MQ=255) cTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAgg > 2:329399/1‑136 (MQ=255) ggCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTccaggcccag > 1:253489/1‑136 (MQ=255) gATACAACGGCGCCAGCTGTTCACGCCAGACCGTTGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGcc < 1:497175/136‑1 (MQ=255) gATACAACGGCGCCAGCTGTTCACGCCAGACCGTTGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGcc < 1:12194/136‑1 (MQ=255) cAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCATACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGCCCTGc > 1:95739/1‑136 (MQ=255) ggCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCGTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGCCCTGCTCGt < 2:55845/136‑1 (MQ=255) gcgcCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGCCCTGCTCGta > 2:202656/1‑135 (MQ=255) gTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGCCCTGCTCGTCACGAATATc < 1:437659/136‑1 (MQ=255) cAGACCGTGGCATCGACGATGCATACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGCCCTGCTCGTCACGAATATCCAGCTGAt < 2:95739/136‑1 (MQ=255) | GATAGGTGTCGATCGCCGCCTTGGCCACACCGGCCAGGCTCATGCCCAGCACTGCAGCTGCCAGCCAGCGCCTCATGGCTTGGCCTCGTCGATCAGGCCCTGATACAACGGCGCCAGCTGTTCACGCCAGACCGTGGCATCGACGATGCCTACGTGCTTGTAGCGGATGATGCCCTTGGCATCGATCAGGAAGGTTTCCGGCGCCCCATACACCCCAAGGTCCAGGCCCAGGCTGCCCTGCTCGTCACGAATATCCAGCTGAT > NC_002947/4917099‑4917361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |