| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,351,540 | G→A | 16.9% | intergenic (+6/‑36) | acsA‑II → / → PP_4703 | acetyl‑CoA synthetase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,351,540 | 0 | G | A | 16.9% | 49.5 / 3.2 | 24 | intergenic (+6/‑36) | acsA‑II/PP_4703 | acetyl‑CoA synthetase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (10/8); new base A (2/2); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACC > NC_002947/5351421‑5351669 | cggcgTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGgccg > 2:459058/1‑136 (MQ=255) gTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCt < 1:156294/136‑1 (MQ=255) gcAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGCGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTAcagcag > 2:342326/1‑136 (MQ=255) aaaaaTCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGTGCGTGGTAGAGGGCCTGATCGACTAACGCCTCTACCAGTAACCGGCGGCCGCAATTCTGGGCGCCCTGTACAGCAgg < 1:342326/135‑1 (MQ=255) aaaaTCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCACCCAGTAACCGGCAGCCGCAAATCTGGCCGCCCTGTACAGCAGGt > 1:114357/1‑136 (MQ=255) aaaaTCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGt > 1:286364/1‑136 (MQ=255) aaaaTCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCAGCCGCAAATCTGGCCGCCCTGTACAGCAGGt > 1:116963/1‑136 (MQ=255) aaaTCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTAcagca > 1:368334/1‑132 (MQ=255) aaaTCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTAcagca < 2:368334/132‑1 (MQ=255) tGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTtcgt > 2:54662/1‑136 (MQ=255) aaCCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCTGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCg > 1:287794/1‑136 (MQ=255) ccGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTc > 2:543152/1‑136 (MQ=255) cccGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCg < 1:543152/136‑1 (MQ=255) aGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGc > 2:371990/1‑136 (MQ=255) cGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGAcc > 1:458107/1‑136 (MQ=255) cGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGAcc > 1:450897/1‑136 (MQ=255) aCAAACGCCTCAACCAGTACCCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCTTATCTAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTg < 2:286364/136‑1 (MQ=255) aCAAACGCCTCAACCAGTACCCGGCACCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGTAAGCCCTTCGTCGCCGTATCGAAACCCCGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTg < 2:114357/136‑1 (MQ=255) aCAAACGCCTCAACCAGTAACCGGCTGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCTACCTg < 2:287794/136‑1 (MQ=255) aCAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTg < 2:128930/136‑1 (MQ=255) aCAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTg < 2:458107/136‑1 (MQ=255) aCAAACGCCTCAACCAGTAACCGGCAGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGACGCCGAATCTAAACCCCGGTCATGAGCCCCACCGGGCTGGCCCTCGGCCAGCTCGACCTg < 2:116963/136‑1 (MQ=255) aaCCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCaa < 2:450897/136‑1 (MQ=255) aCCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCACAAGGGCGAcc > 1:30609/1‑136 (MQ=255) | CGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACC > NC_002947/5351421‑5351669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |