| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,514,905 | T→G | 52.8% | L36R (CTC→CGC) | urtB → | urea ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,514,905 | 0 | T | G | 52.8% | ‑6.5 / 2.5 | 18 | L36R (CTC→CGC) | urtB | urea ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (2/5); new base G (2/5); total (5/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCG > NC_002947/5514784‑5515030 | tCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAAACACCCTGGCAACCCACGCCAGCGAGGGCGAAATCATTCTCACCGCCAACCCCGCCCAGCAGGCCGCCCGGCACGCACGCAGGgcac > 2:290307/1‑135 (MQ=255) gCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGGCAGCTCGGAGGGGGGGGAGCACAccccccagc > 1:423472/1‑131 (MQ=255) acccTCCTGCCCACCCTCCTGCTGCAAACCCCCCTGGCACCCCCCGCCAGCGCGGGCGAATTCTTCCACCCCGCCACGCCCGCCGAGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGcc < 2:58388/133‑1 (MQ=255) cccACCCGCCTGCCGCTACCCCCCCCGCCACCCCCCCCCCGCGCGGGCGAATGCTTCCACCCCCCCACGCCCGCCGCGCCGGCCGGCCGGCCCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCgctgc < 1:313016/134‑1 (MQ=255) ctcctGCTCCAACCCCCCCGCGCACCCCACGCCTGGGTGGGATATTTTTTCCTCACCCCCAACCCCCCGGACCTGGCGGGCCGGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGaaa < 2:514666/136‑1 (MQ=255) cAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGCGGCGGCCGGGCGGGGGGCAGGCGGGGGCGCACCACCCCCAGCCGCCCGCCCGGCGCGGCGGGGAAACCAGCGCCCAGGCCGCCTCGc > 2:209318/1‑136 (MQ=255) cctctaGCGAGGGATAATTCTTTCTCACCGCCACGCCCGGCGCGCCGGGCGGCCTGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCaa < 1:19201/131‑1 (MQ=255) cAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCTAGCAGGCCGGCCTGCTCGAAGGCTGGGCATCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGAc > 2:421006/1‑136 (MQ=255) cAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCGGCGCGAACGCGGGGCAGCCCAACCCCCAGCCGCGCGCCAGCCGCGGCGGGGAAACCAGCGCCAAGGCCGCCACGCCACCCAAGAc > 2:106006/1‑136 (MQ=255) gAGGGCTATTTCTTTCTCACCGCCACGCCGGCGTCGCAGGCCGGCGTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAgc < 2:129381/136‑1 (MQ=255) gAGGGCGATTTCTTTCACACCGCCAAGCCCGCCGTGCGGGCGGGGCTGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAgc < 2:122125/136‑1 (MQ=255) aatctttcaCACCCCCCCCCCCGCCGAGCCGCCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTg < 1:11436/134‑1 (MQ=255) aTTGTTACTCACCGCCCTGCCCGCCCAGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTg < 2:379958/136‑1 (MQ=255) aTTCTTACCCCCCCCCACCCCCCCCGCGCCGGCCGGCCGGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTg < 1:198760/136‑1 (MQ=255) cgCCCGCCGCGCCGGCCGCCCTGCCCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCt < 1:156589/135‑1 (MQ=255) gccggccgCCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCg < 1:209318/136‑1 (MQ=255) gccggccTGCCCCAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCg < 1:75903/136‑1 (MQ=255) gccgcccTGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCg < 1:179590/136‑1 (MQ=255) | TCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCG > NC_002947/5514784‑5515030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |