| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,920,646 | G→A | 19.0% | intergenic (‑82/+43) | argA ← / ← argE | amino acid N‑acetyltransferase/acetylornithine deacetylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,920,646 | 0 | G | A | 19.0% | 41.6 / 4.8 | 21 | intergenic (‑82/+43) | argA/argE | amino acid N‑acetyltransferase/acetylornithine deacetylase |
| Reads supporting (aligned to +/- strand): ref base G (10/7); new base A (2/2); total (12/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.71e-01 | |||||||||||
GGCATTGATATAGGGGGATGCATGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCAATAGACGCACGGTAGGCTCGATTCGTGACATTTCAAGGTATTCGCCGGGCTGGTGGG > NC_002947/5920514‑5920780 | ggCATTGATATAGGGGGATGCATGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCAcgcgc < 1:106185/136‑1 (MQ=255)ggCATTGATATAGGGGGATGCATGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCAcgcgc < 1:278602/136‑1 (MQ=255) atatAGGGGGATGCATGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTctcc > 2:142278/1‑136 (MQ=255) cATGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAAc > 1:89672/1‑136 (MQ=255) atcaCGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGAAAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGCATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGACTCCTCTAGGCAGCAACg > 1:268015/4‑136 (MQ=255) aTGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGTGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCgg < 2:299928/117‑1 (MQ=255) aTGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGTGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCgg > 1:299928/1‑117 (MQ=255) aTGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACg > 1:302080/1‑136 (MQ=255) aTGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACg > 1:491049/1‑136 (MQ=255) gTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACACGCGGTCTCCTCTAGGCAGGAACGAATCAGtt > 1:299404/1‑132 (MQ=255) gTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACACGCGGTCTCCTCTAGGCAGGAACGAATCAGtt > 1:296485/1‑132 (MQ=255) gTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACACGCGGTCTCCTCTAGGCAGGAACGAATCAGtt < 2:296485/132‑1 (MQ=255) gTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACACGCGGTCTCCTCTAGGCAGGAACGAATCAGtt < 2:299404/132‑1 (MQ=255) aTGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAgg < 1:175949/136‑1 (MQ=255) cAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAAt < 2:411281/136‑1 (MQ=255) aaGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAgg < 2:302080/136‑1 (MQ=255) ggAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCaa > 2:450097/1‑136 (MQ=255) ttCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCAATAGACGCACGGTAGGCTCGATTc < 1:142278/136‑1 (MQ=255) catcGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCAATAGACGCACGGTAGGCTCGATTCGTGACAtt < 1:44265/136‑1 (MQ=255) aGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACTAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCTCGCAATAGAGGCACGGTAGGCTCGATTCGTGACATTTCAAGGTATTCg < 2:491049/136‑1 (MQ=255) tGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCAATAGACGCACGGTAGGCTCGATTCGTGACATTTCAAGGTATTCGCCggg > 1:216400/1‑136 (MQ=255) ggTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCAATAGACGCACGGTAGGCTCGATTCGTGACATTTCAAGGTATTCGCCGGGCtg > 2:185620/1‑136 (MQ=255) tCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGACCAGGTCACGCAATAGACGCACGGTAGGCTCGATTCGTGACATTTCAAGGTATTCGCCGGGCtggt > 2:455419/1‑136 (MQ=255) cgcgcgGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCAATAGACGCACGGTAGGCTCGATTCGTGACATTTCAAGGTATTCGCCGGGCTGGTggg < 1:450097/136‑1 (MQ=255) | GGCATTGATATAGGGGGATGCATGACGCAGCCAGTTGACGTAATCGGGCATGACAGGGCCTGTGGATAAGTGGACGGAGAACGGCGATGCAGGGGGCGTTCAGGATCATCGTCGGAACAGGCTTGCGGTCACGCGCGGTCTCCTCTAGGCAGGAACGAATCAGTTCGATTGACGTTTAGTGCAGGCAATAGTGCCGGATCAGGTCACGCAATAGACGCACGGTAGGCTCGATTCGTGACATTTCAAGGTATTCGCCGGGCTGGTGGG > NC_002947/5920514‑5920780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |