Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 476,133 | A→T | 100% | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 476,133 | 0 | A | T | 100.0% | 26.1 / NA | 11 | Q141L (CAG→CTG) | tsaD | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (7/4); total (7/4) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GCGCTGGCCTTTGCCTGGGACATCCCGGCGATCGGTGTGCACCACATGGAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCAGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTGGGCGAAAGCCTGGACGATGCTGCCGGTGAAGCGTTCGACAAGACCGCC > NC_002947/476000‑476221 | gcgcTGGCCTTTGCCTGGGACATCCCGGCGATCGGTGTGCACCACATGGAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGc > 2:307919/1‑136 (MQ=255) aTCCCGGCGATCGGTGTGCACCACATGGAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCg < 1:34422/136‑1 (MQ=255) gAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTgg < 1:345462/127‑1 (MQ=255) gAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTgg < 1:421133/127‑1 (MQ=255) gAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTgg > 2:345462/1‑127 (MQ=255) gAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTgg > 2:421133/1‑127 (MQ=255) aCCTGCTGGCACCCATGCTGGAAGAAACCCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCGGTCAGTCCGAACTGTTGGGCGAAAGCCTGGACGa > 2:126038/1‑136 (MQ=255) ggCACCCATGCTGGAATAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTGGGCGAAAGCCTGGACGATGCTGcc > 2:85128/1‑136 (MQ=255) ggAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGt < 1:321393/72‑1 (MQ=255) ggAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGt > 2:321393/1‑72 (MQ=255) gCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCTGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTGGGCGAAAGCCTGGACGATGCTGCCGGTGAAGCGTTCGACAAGACCGcc > 2:281605/1‑136 (MQ=255) | GCGCTGGCCTTTGCCTGGGACATCCCGGCGATCGGTGTGCACCACATGGAGGGTCACCTGCTGGCACCCATGCTGGAAGAAAACCCGCCAGAGTTTCCGTTCGTCGCTTTGTTGGTTTCCGGTGGACATACCCAGCTGGTTCGGGTCGATGGCATCGGTCAGTACGAACTGTTGGGCGAAAGCCTGGACGATGCTGCCGGTGAAGCGTTCGACAAGACCGCC > NC_002947/476000‑476221 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |