| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 97,931 | G→T | 25.0% | V30V (GTC→GTA) | PP_0091 ← | putative lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 97,931 | 0 | G | T | 25.0% | 34.7 / 3.2 | 16 | V30V (GTC→GTA) | PP_0091 | putative lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (3/9); new base T (2/2); total (5/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.46e-01 | |||||||||||
GTAGATTTCATAATCGAAGCGCACCACCAGTTCATGCTTGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGCGATCAGCATCATGGGCTGGCGCATGGCAAAACTCCCACTTGCGATTTACAAGT > NC_002947/97796‑98049 | gTAGATTTCATAATCGAAGCGCACCACCAGTTCATGCTTGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCg < 1:401631/136‑1 (MQ=255)gTAGATTTCATAATCGAAGCGCACCACCAGTTCATGCTTGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCg < 1:253774/136‑1 (MQ=255) tttCATAATCGAAGCGCACCACCAGTTCATGCTTGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCa < 2:26573/136‑1 (MQ=255) ccaccaGTTCATGCTTGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGAc < 1:180575/136‑1 (MQ=255) aGTTCAAGCTTGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGACGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGCCCTGCTAGGGGTCGACGggcg > 1:13663/1‑136 (MQ=255) ttGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCTACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGc > 1:285219/1‑136 (MQ=255) ttGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCTACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGc > 1:454806/1‑136 (MQ=255) gtCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAg < 1:217613/136‑1 (MQ=255) cTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGccccc < 1:203290/136‑1 (MQ=255) tACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTAc > 1:479448/1‑136 (MQ=255) ccATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAg < 1:546357/118‑1 (MQ=255) ccATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAg > 2:546357/1‑118 (MQ=255) cATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGTTCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGc < 1:29118/136‑1 (MQ=255) tCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGCGa < 1:100442/136‑1 (MQ=255) aTCACCCGACCGGGGGTCATGGTGTACAGATCTACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGCGATCAGCATCATGGGCTGGCGCATGGCAAAACTCCCAc < 2:285219/136‑1 (MQ=255) aTCACCCGACCGGGGGTCATGGTGTACAGATCTACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGCGATCAGCATCATGGGCTGGCGCATGGCAAAACTCCCAc < 2:454806/136‑1 (MQ=255) aTCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGCGATCAGCATCATGGGCTGGCGCATGGCAAAACTCCCAc < 1:412344/136‑1 (MQ=255) gTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGCTATCAGCATCATGGGCTGGCGCATGGCAAAACTCCCACTTGCGATTTACAAGt < 1:237068/136‑1 (MQ=255) | GTAGATTTCATAATCGAAGCGCACCACCAGTTCATGCTTGCCCGGTGTCACCTGAAAGTACCGGCCATCGTCCAGGCGCTTGCCGTCGAGGCGGTCGGCCATGATCACCCGACCGGGGGTCATGGTGTACAGATCGACCCAGGCCTGCTTGGGGTCGACGGGCGGCAAGGGGCTGGCGCAAGCCCCCAGTGTACTGAGGGCGATCAGCATCATGGGCTGGCGCATGGCAAAACTCCCACTTGCGATTTACAAGT > NC_002947/97796‑98049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |