| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 585,643 | C→A | 21.0% | M377I (ATG→ATT) | PP_0496 ← | sodium/alanine symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 585,643 | 0 | C | A | 21.0% | 44.7 / 2.8 | 19 | M377I (ATG→ATT) | PP_0496 | sodium/alanine symporter |
| Reads supporting (aligned to +/- strand): ref base C (9/6); new base A (2/2); total (11/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.96e-01 | |||||||||||
GCAGGGCCAGGGCCACCAGGTTGACGAAGGCCAGGCAGGTCATGGTGATGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACGCGCCCCCAGTCACC > NC_002947/585516‑585768 | cctgggccagggccaCCAGGTTGACGACGGCCAGGCAGGTCATGGTGATGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAacac < 1:177263/133‑1 (MQ=255) gccagggccaCCAGGTGGACGAAGGCCAGGCTGGTCTTGGTGATGTCGGCGAAGGCTAACACGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTAcgc < 2:207725/136‑1 (MQ=255) ggTTGACGAAGGCCAGGCAGGTCATGGTGATGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCATCGAACCACACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAg > 1:284900/1‑136 (MQ=255) aCGAAGGCCAGGCAGGTCATGGTGATGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAAtt > 1:105585/1‑136 (MQ=255) aTGGTGATGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCAACGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACAACGCGGTTACGGCTCAGGAATAGCAGGCTGTTCTCGCCGa > 1:354576/1‑136 (MQ=255) ggTTATGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAgg < 2:301144/136‑1 (MQ=255) ggTGTTGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCGGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAgg < 1:302096/136‑1 (MQ=255) acacGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGTAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCa > 1:179046/1‑136 (MQ=255) gTCGACAGGTCTTGAATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGa < 2:382520/136‑1 (MQ=255) acGACCAGTGCCAGCACCAGGCCACGGAACACAATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAgg > 2:56327/1‑84 (MQ=255) acGACCAGTGCCAGCACCAGGCCACGGAACACAATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAgg > 2:53743/1‑84 (MQ=255) acGACCAGTGCCAGCACCAGGCCACGGAACACAATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAgg < 1:56327/84‑1 (MQ=255) acGACCAGTGCCAGCACCAGGCCACGGAACACAATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAgg < 1:53743/84‑1 (MQ=255) cAGCACCAGGCCACGGAACACCATCACCACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCGCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACgcgc < 1:456185/136‑1 (MQ=255) cAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACgcgc > 2:432274/1‑136 (MQ=255) cAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACGCGCCCCCAg > 1:270788/1‑136 (MQ=255) ccACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACGCGCCCCCAGTCAc > 2:378740/1‑136 (MQ=255) ccACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACGCGCCCCCAGTCAc > 1:354568/1‑136 (MQ=255) cACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACGCGCCCCCAGTCAcc > 2:204067/1‑136 (MQ=255) | GCAGGGCCAGGGCCACCAGGTTGACGAAGGCCAGGCAGGTCATGGTGATGTCGGCGAAGGCGAACACGGTCGACAGGTCTTGCATCGAACCCCACACGACCAGTGCCAGCACCAGGCCACGGAACACCATCAACACTACGCGGTTACGGCTGAGGAATTGCAGGCTGTTCTCGCCGAGGTAGTAGTTGTAGAGGATGCAGGTGAAGACGAACAGCGACAGCGCCACGCTGACGAACACGCGCCCCCAGTCACC > NC_002947/585516‑585768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |