Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 858,206 | A→G | 30.8% | A207A (GCT→GCC) | phr ← | deoxyribodipyrimidine photolyase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 858,206 | 0 | A | G | 30.8% | 11.4 / 5.9 | 13 | A207A (GCT→GCC) | phr | deoxyribodipyrimidine photolyase |
Reads supporting (aligned to +/- strand): ref base A (2/7); new base G (2/2); total (4/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.30e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGGGGCGAAATCACGCCGGCGGCCAGGTAGGGGGAAAGCTGGCTGGTACCAGGCTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATGTTGCGGGATTGGGTCGCTGCCGATGTTCAGCGGGGCCTGGCGCTTCACCCGCCGTGCCAGGGCGGGCAGGCTG > NC_002947/858074‑858341 | gCGGGGCGAAATCACGCCGGCGGCCAGGTAGGGGGAAAGCTGGCTGGTACCAGGCTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCGGCt > 2:22813/1‑136 (MQ=255) gCGGGGCGAAATCACGCCGGCGGCCAGGTAGGGGGAAAGCTGGCTGGTACCAGGCTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCGGCt > 2:25457/1‑136 (MQ=255) gAAATCACGCCGGCGGCCAGGTAGGGGGAAAGCTGGCTGGTACCAGGCTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCAGCTTCACCgg < 2:515126/136‑1 (MQ=255) tAGGGGGAAAGCTGGCTGGTACCAGGCTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATg > 2:519621/1‑136 (MQ=255) tggctggTACCAGGCTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGttt > 1:87106/1‑136 (MQ=255) cTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCctct < 1:266798/136‑1 (MQ=255) caggcaAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCGGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATg < 1:22813/136‑1 (MQ=255) caggcaAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCGGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATg < 1:25457/136‑1 (MQ=255) caggcaAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATg < 2:505497/136‑1 (MQ=255) cGGGACTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATGTTGCGGGATTGGGTCGCTGCCGATGTTCAGCGGGGCCTGGCGCTTCACCCGCCGTGCCa < 2:14461/136‑1 (MQ=255) aCTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATGTTGCGGGATTGGGTCGCTGCCGATGTTCAGCGGGGCCTGGCGCTTCACCCGCCGTGCCAgggc < 1:68162/136‑1 (MQ=255) cTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATGTTGCGGGATTGGGTCGCTGCCGATGTTCAGCGGGGCCTGGCGCTTCACCCGCCGTGCCAGGGCGGGCAgg < 1:443236/136‑1 (MQ=255) cTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATGTTGCGGGATTGGGTCGCTGCCGATGTTCAGCGGGGCCTGGCGCTTCACCCGCCGTGCAAGGGCGGGCAgg < 2:87106/136‑1 (MQ=255) aGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATGTTGCGGGATTGGGTCGCTGCCGATGTTCAGCGGGGCCTGGCGCTTCACCCGCCGTGCCAGGGCGGGCAGGCTg < 2:39043/136‑1 (MQ=255) | GCGGGGCGAAATCACGCCGGCGGCCAGGTAGGGGGAAAGCTGGCTGGTACCAGGCTTGGCAGGCAAGTCGCGCAAGTGGTGGTAGTCGTCGATGGTTTCGTCCAGGAAGCGTGACAGGCGGGACTGTGCCTCAGCTTCACCGGCTGGCCAGTGGTCGCGCAATGCGGGCGTGGTTTTTCCGAACCCCTCTACATGTTGCGGGATTGGGTCGCTGCCGATGTTCAGCGGGGCCTGGCGCTTCACCCGCCGTGCCAGGGCGGGCAGGCTG > NC_002947/858074‑858341 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |