Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 958,524 | C→A | 28.5% | intergenic (+168/‑25) | ykgJ → / → PP_0820 | ferredoxin/acetyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 958,524 | 0 | C | A | 28.5% | 28.0 / 3.5 | 14 | intergenic (+168/‑25) | ykgJ/PP_0820 | ferredoxin/acetyltransferase |
Reads supporting (aligned to +/- strand): ref base C (7/3); new base A (2/2); total (9/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.80e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCATGCGCCATGCCGATGCCGCGCAGTGGCTGGCGATCATG > NC_002947/958425‑958653 | aGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGaccccaccc < 2:384319/136‑1 (MQ=255) gTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGc > 2:14090/1‑136 (MQ=255) gCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCCCCCCGCAg > 1:242646/1‑136 (MQ=255) tgAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCACCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGcc > 2:257569/1‑136 (MQ=255) tgAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCACCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGcc > 2:338441/1‑136 (MQ=255) cGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCACCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCAc < 1:257569/136‑1 (MQ=255) cGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCACCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCAc < 1:338441/136‑1 (MQ=255) cccGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCa > 1:187004/1‑136 (MQ=255) cccGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCa > 1:425899/1‑136 (MQ=255) aaCCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCATGCGCCatgccga > 1:352583/1‑136 (MQ=255) aaCCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCATGCGCCatgccga > 1:453814/1‑136 (MQ=255) aCGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCATGCGCCATGCCGATGCCGCGCAGtgg < 1:476031/136‑1 (MQ=255) cTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCATGCGCCATGCCGATGCCGCGCAGTGGCTGGCGAt > 2:372723/1‑136 (MQ=255) cATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCATGCGCCATGCCGATGCCGCGCAGTGGCTGGCGATCATg < 1:14090/136‑1 (MQ=255) | AGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCCCCAGTGACCTCTGCCTCGACAGCCCACGCCTGCAACTGCGCCCCATGCGCCATGCCGATGCCGCGCAGTGGCTGGCGATCATG > NC_002947/958425‑958653 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |