| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,315,744 | G→T | 24.9% | I248I (ATC→ATA) | PP_1144 ← | membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,315,744 | 0 | G | T | 24.9% | 36.6 / 3.1 | 16 | I248I (ATC→ATA) | PP_1144 | membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (6/6); new base T (2/2); total (8/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.46e-01 | |||||||||||
CGCCTGCTGCAGCGAAGCGCGGGCCTGGTCCAGTTGGCTGAGCAGTACGCTGACCCGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGG > NC_002947/1315621‑1315868 | cgccTGCTGCAGCGAAGCGCGGGCCTGGTCCAGTTGGCTGAGCAGTACGCTGACCCGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGtg < 1:250867/136‑1 (MQ=255)cgccTGCTGCAGCGAAGCGCGGGCCTGGTCCAGTTGGCTGAGCAGTACGCTGACCCGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTAGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGtg > 1:439346/1‑136 (MQ=255) gctgcAGCGAAGCGCGGGCCTGGTCCAGTTGGCTGAGCAGTACGCTGACCCGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTTATCAGCAGGGTGATGaa > 1:376371/1‑136 (MQ=255) ctgcAGCGAAGCGCGGGCCTGGTCCAGTTGGCTGAGCAGTACGCTGACCCGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAg < 1:326104/136‑1 (MQ=255) cGAAGCGCGGGCCTGGTCCAGTTGGCTGAGCAGTACGCTGACCCGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATg > 2:65780/1‑136 (MQ=255) cGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTTATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCa > 1:252937/1‑136 (MQ=255) cGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCa > 1:398204/1‑136 (MQ=255) tCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTTATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTAt < 2:376371/136‑1 (MQ=255) gCTTTGCAGCTTCTTGTAGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCAAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATg < 2:439346/136‑1 (MQ=255) aGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGcccagtccca > 1:424670/1‑76 (MQ=255) aGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGcccagtccca < 2:424670/76‑1 (MQ=255) tGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGc > 2:264707/1‑136 (MQ=255) ccAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCAGACAt < 2:344493/136‑1 (MQ=255) ccAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCAGACAt < 2:422470/136‑1 (MQ=255) tGCTGGCGCCACTTATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGt < 2:252937/136‑1 (MQ=255) cTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTgg > 1:14570/1‑136 (MQ=255) | CGCCTGCTGCAGCGAAGCGCGGGCCTGGTCCAGTTGGCTGAGCAGTACGCTGACCCGGCGCAGGTCGTGCTCCTTGCTTTGCAGCTTCTTGTCGGCCAGTGCGGCGCTGATGCTGGCGCCACTGATCAGCAGGGTGATGAAGCCGATGCCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGG > NC_002947/1315621‑1315868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |