| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,018,313 | G→T | 23.5% | P234H (CCC→CAC) | PP_1793 ← | group 2 family glycosyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,018,313 | 0 | G | T | 23.5% | 38.4 / 3.0 | 17 | P234H (CCC→CAC) | PP_1793 | group 2 family glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base G (6/7); new base T (2/2); total (8/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.22e-01 | |||||||||||
CGGGCTGCCTACCAGGTGGGTGTTGTCGGCGAAGCGGATATGCACCTGCGCCTTGGGGTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTGGATCTCTCTGTGTGTCTCCAGGTACCGCACCACACCT > NC_002947/2018189‑2018444 | cGGGCTGCCTACCAGGTGGGTGTTGTCGGCGAAGCGGATATGCACCTGCGCCTTGGGGTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGTGTATGCTGGCg > 1:269406/1‑136 (MQ=255)cGGGCTGCCTACCAGGTGGGTGTTGTCGGCGAAGCGGATATGCACCTGCGCCTTGGGGTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGTGTATGCTGGCg > 1:49496/1‑136 (MQ=255) tgtCGGCGAAGCGGATATGCACCTGCGCCTTGGGGTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTc > 1:136275/1‑136 (MQ=255) aGCGGATATGCACCTGCGCCTTGGGGTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGAt > 1:242064/1‑136 (MQ=255) aGCGGATATGCACCTGCGCCTTGGGGTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGAt > 1:25052/1‑136 (MQ=255) ggTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCtt > 1:362841/1‑115 (MQ=255) ggTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCtt < 2:362841/115‑1 (MQ=255) acTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAgg > 2:418070/1‑136 (MQ=255) aGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCa < 2:25052/136‑1 (MQ=255) ccgccATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGcc > 2:373648/1‑132 (MQ=255) ccgccATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGcc < 1:373648/132‑1 (MQ=255) cATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTg < 2:136275/136‑1 (MQ=255) cATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCACGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTg < 2:380272/136‑1 (MQ=255) aGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGTGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTGGAtc < 2:269406/136‑1 (MQ=255) aGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGTGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTGGAtc < 2:49496/136‑1 (MQ=255) cAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTGGATCTCTCtgt < 2:213372/136‑1 (MQ=255) aaGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTGGATCTCTCTGTGTGTCTCCAGGTACCGcacca < 2:339277/136‑1 (MQ=255) gtggggtATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTGGATCTCTCTGTGTGTCTCCAGGTACCGCACCACACCt > 2:47851/1‑136 (MQ=255) | CGGGCTGCCTACCAGGTGGGTGTTGTCGGCGAAGCGGATATGCACCTGCGCCTTGGGGTTTGGCACACTTACACGCAAGCCGCCATGAGTGGTGCAAAGGCCGGCAGCGCTGAGTAAGGGGTGGGGTATGCTGGCGACGGCGTCAACGTTCACGCTGTCAGCCTCGATCTTCAAGGACGCAGGAGCCTGCAGGTTGCCAAGGTCAATGGCCCATCCCTGGATCTCTCTGTGTGTCTCCAGGTACCGCACCACACCT > NC_002947/2018189‑2018444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |