| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,777,922 | G→T | 14.2% | intergenic (‑115/‑67) | PP_2425 ← / → calA | AraC family transcriptional regulator/coniferyl alcohol dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,777,922 | 0 | G | T | 14.2% | 85.8 / 2.0 | 28 | intergenic (‑115/‑67) | PP_2425/calA | AraC family transcriptional regulator/coniferyl alcohol dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (14/10); new base T (2/2); total (16/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 | |||||||||||
GTGACGGGTCAGTTGCATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTT > NC_002947/2777790‑2778050 | gTGACGGGTCAGTTGCATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGc < 2:203350/136‑1 (MQ=255) gggTCAGTTGCATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAggc > 1:234767/1‑136 (MQ=255) gTTGCATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGaa < 2:523203/136‑1 (MQ=255) gTTGCATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGaa > 2:416289/1‑136 (MQ=255) gTTGCATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCAAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGaa > 2:13176/1‑136 (MQ=255) cATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAacgac > 1:401519/1‑136 (MQ=255) gtggACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACgcgc < 1:223027/136‑1 (MQ=255) aCCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTTGGCGAGGCGGCGAACGACGCGCaaaa > 1:133557/1‑136 (MQ=255) cAAGGGCAGAGAATCAGACTGCTTGATCTTCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATGAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAAtg < 2:121367/136‑1 (MQ=255) cAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAAtg > 1:438512/1‑136 (MQ=255) aTCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAAt > 1:279895/1‑136 (MQ=255) gATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTttcacttca > 1:313923/1‑136 (MQ=255) gATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTttcacttca > 1:95896/1‑136 (MQ=255) gATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTttcacttca > 1:86351/1‑136 (MQ=255) catcGCAGATTGAGGGCATGGCGCCAGCCATGGATTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTg < 2:335212/136‑1 (MQ=255) cAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAgg < 1:533790/136‑1 (MQ=255) ggCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATg < 2:281235/136‑1 (MQ=255) gcgcCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTTGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATAcc < 2:133557/136‑1 (MQ=255) cgcCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCg > 2:122675/1‑136 (MQ=255) gccagccaTGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGc < 2:313923/136‑1 (MQ=255) ccagccaTGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGcc > 2:199541/1‑136 (MQ=255) ttGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTTGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGc > 2:508028/1‑136 (MQ=255) ttGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGCGGCGGCGAACGACGCGCAAAATGAGTCGCCAGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTAAACCGCCATCGGTTATga > 2:321937/1‑135 (MQ=255) gAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCcca < 1:13176/136‑1 (MQ=255) catgcatgCCGGAGAATCAGTCGTTGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGcccc < 1:508028/136‑1 (MQ=255) atgcatgcCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCCGccccc > 2:144790/1‑136 (MQ=255) atgcatgcCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGccccc < 2:401519/136‑1 (MQ=255) cAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAGCCCCCACCAGCCCCCGGGCCCCCCTGACGtt > 2:401633/1‑136 (MQ=255) | GTGACGGGTCAGTTGCATGGTGGACCAAGGGCAGAGAATCAGACAGCTTGATCATCGCAGATTGAGGGCATGGCGCCAGCCATGGCTTGGCATCTTCGTAGAATCAGGCATGCATGCCGGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTT > NC_002947/2777790‑2778050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |