New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2090429	11 (0.740)	5 (0.340) +C	4/242	NT	35.9%	intergenic (+146/‑449)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2090736	7 (0.470)					intergenic (+453/‑142)	PP_1864/PP_1865	hypothetical protein/transposase

TCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2090316‑2090429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATCGCAAACGGACTGTACGCCCGATCAGAACCGGCGCTAAAGCTTTTGAGCTTTTGGGCCTTTGGGTTGTGCGCTTTCACATCAAGTAGACATTCATTCACGATGC  <  NC_002947/2090736‑2090630                                                                                                                   |                                                                                                            TCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGGCCATCGCAAACGGACTGTACGC                                                                                        >  2:239283/1‑136                 CTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGGCCATCGCAAACGGACTGTACGCCCGATCAGAACCGGCG                                                                        <  1:239283/136‑1                  TTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCAACGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGGCCATCGCAAACGGACTGTACGCCCGATCAGAACCGGCGC                                                                       >  2:286288/1‑136                                                                                            GAGGCCGAGTGGAGGCATTGCGGCCATCGCAAACGGACTGTACGCCCGATCAGAACCGGCGCTAAAGCTTTTGAGCTTTTGGGCCTTTGGGTTGTGCGCTTTCACATCAAGTAGACATTCATTCACGATGC  >  1:224303/1‑131                                                                                            GAGGCCGAGTGGAGGCATTGCGGCCATCGCAAACGGACTGTACGCCCGATCAGAACCGGCGCTAAAGCTTTTGAGCTTTTGGGCCTTTGGGTTGTGCGCTTTCACATCAAGTAGACATTCATTCACGATGC  <  2:224303/131‑1                                                                                                                   |                                                                                                            TCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2090316‑2090429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATCGCAAACGGACTGTACGCCCGATCAGAACCGGCGCTAAAGCTTTTGAGCTTTTGGGCCTTTGGGTTGTGCGCTTTCACATCAAGTAGACATTCATTCACGATGC  <  NC_002947/2090736‑2090630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.